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. 2022 May 10;17(5):e0266742. doi: 10.1371/journal.pone.0266742

Table 2. Number of haplotypes, nucleotide diversity, gene diversity and substitutions identified by gene for the genotyping of the P. aeruginosa strains via MLST.

MLST H strains (n = 77) A strains (n = 14) H + A (n = 91) acsA aroE guaA mutL nuoD ppsA trpE
Size (nucleotides) 2882 2882 2882 390 498 373 442 366 370 443
Number of Haplotypes 35 14 48 18 12 14 17 9 14 16
Pi 0.0067 0.0074 0.0071 0.0099 0.0102 0.0055 0.0036 0.0024 0.007 0.0101
Eta 0.0057 0.0071 0.0064 0.0066 0.0071 0.0063 0.0049 0.0054 0.0059 0.0084
Hd 0.802 1 0.858 0.769 0.751 0.766 0.678 0.557 0.777 0.779
S 81 65 94 13 18 12 11 10 11 19

H: nosocomial strains; A: environmental strains.

Haplotype was considered as the DNA sequence from the concatenated sequences obtained from the Multilocus Sequence Typing (MLST).

Pi: nucleotide diversity; Eta: theta (per site); Hd: gene diversity; S: substitutions.