Table 2. Number of haplotypes, nucleotide diversity, gene diversity and substitutions identified by gene for the genotyping of the P. aeruginosa strains via MLST.
MLST | H strains (n = 77) | A strains (n = 14) | H + A (n = 91) | acsA | aroE | guaA | mutL | nuoD | ppsA | trpE |
---|---|---|---|---|---|---|---|---|---|---|
Size (nucleotides) | 2882 | 2882 | 2882 | 390 | 498 | 373 | 442 | 366 | 370 | 443 |
Number of Haplotypes | 35 | 14 | 48 | 18 | 12 | 14 | 17 | 9 | 14 | 16 |
Pi | 0.0067 | 0.0074 | 0.0071 | 0.0099 | 0.0102 | 0.0055 | 0.0036 | 0.0024 | 0.007 | 0.0101 |
Eta | 0.0057 | 0.0071 | 0.0064 | 0.0066 | 0.0071 | 0.0063 | 0.0049 | 0.0054 | 0.0059 | 0.0084 |
Hd | 0.802 | 1 | 0.858 | 0.769 | 0.751 | 0.766 | 0.678 | 0.557 | 0.777 | 0.779 |
S | 81 | 65 | 94 | 13 | 18 | 12 | 11 | 10 | 11 | 19 |
H: nosocomial strains; A: environmental strains.
Haplotype was considered as the DNA sequence from the concatenated sequences obtained from the Multilocus Sequence Typing (MLST).
Pi: nucleotide diversity; Eta: theta (per site); Hd: gene diversity; S: substitutions.