Binding free energies of inhibitors to EGFR calculated by MM-PBSA methoda.
Energy | TAK-285 | W2P | HKI-272 | |||
---|---|---|---|---|---|---|
WT | T790M/L858R | WT | T790M/L858R | WT | T790M/L85R | |
ΔEele | −30.59 ± 4.06 | −20.23 ± 4.42 | −30.16 ± 4.33 | −28.26 ± 4.91 | −23.05 ± 4.12 | −17.86 ± 4.15 |
ΔEvdw | −62.49 ± 2.64 | −56.14 ± 2.60 | −60.41 ± 2.76 | −55.63 ± 2.28 | −61.71 ± 2.68 | −59.64 ± 2.38 |
ΔGpol | 60.61 ± 5.07 | 49.58 ± 5.01 | 58.38 ± 4.99 | 57.29 ± 3.62 | 51.04 ± 5.53 | 49.28 ± 4.87 |
ΔGnonpol | −7.13 ± 0.13 | −6.53 ± 0.31 | −7.34 ± 0.16 | −6.89 ± 0.05 | −7.43 ± 0.33 | −7.50 ± 0.32 |
bΔGele+pol | 30.02 ± 3.56 | 29.36 ± 3.38 | 28.22 ± 3.15 | 29.03 ± 3.01 | 27.99 ± 3.22 | 31.42 ± 3.83 |
−TΔS | 22.43 ± 4.15 | 21.76 ± 4.18 | 22.91 ± 4.13 | 21.80 ± 3.79 | 22.93 ± 4.03 | 21.47 ± 3.99 |
cΔGbind | −17.17 | −11.56 | −16.62 | −11.69 | −18.22 | −14.25 |
dΔGexp | −11.54 | −6.97 | −11.45 | −7.00 | −11.82 | −9.87 |
All values are in kcal mol−1.
ΔGele+pol = ΔEele + ΔGpol.
ΔGbind = ΔEele + ΔEvdw + ΔGpol + ΔGnonpol − TΔS.
The experimental values were derived from the experimental IC50 values using the equation ΔGexp = −TR ln IC50. In this calculation, the nonlinear regression analysis of the percentage inhibitions was used to compute the IC50 mentioned in ref. 29.