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. 2018 Nov 29;8(70):39797–39810. doi: 10.1039/c8ra06844e

Binding free energies of inhibitors to EGFR calculated by MM-PBSA methoda.

Energy TAK-285 W2P HKI-272
WT T790M/L858R WT T790M/L858R WT T790M/L85R
ΔEele −30.59 ± 4.06 −20.23 ± 4.42 −30.16 ± 4.33 −28.26 ± 4.91 −23.05 ± 4.12 −17.86 ± 4.15
ΔEvdw −62.49 ± 2.64 −56.14 ± 2.60 −60.41 ± 2.76 −55.63 ± 2.28 −61.71 ± 2.68 −59.64 ± 2.38
ΔGpol 60.61 ± 5.07 49.58 ± 5.01 58.38 ± 4.99 57.29 ± 3.62 51.04 ± 5.53 49.28 ± 4.87
ΔGnonpol −7.13 ± 0.13 −6.53 ± 0.31 −7.34 ± 0.16 −6.89 ± 0.05 −7.43 ± 0.33 −7.50 ± 0.32
bΔGele+pol 30.02 ± 3.56 29.36 ± 3.38 28.22 ± 3.15 29.03 ± 3.01 27.99 ± 3.22 31.42 ± 3.83
TΔS 22.43 ± 4.15 21.76 ± 4.18 22.91 ± 4.13 21.80 ± 3.79 22.93 ± 4.03 21.47 ± 3.99
cΔGbind −17.17 −11.56 −16.62 −11.69 −18.22 −14.25
dΔGexp −11.54 −6.97 −11.45 −7.00 −11.82 −9.87
a

All values are in kcal mol−1.

b

ΔGele+pol = ΔEele + ΔGpol.

c

ΔGbind = ΔEele + ΔEvdw + ΔGpol + ΔGnonpolTΔS.

d

The experimental values were derived from the experimental IC50 values using the equation ΔGexp = −TR ln IC50. In this calculation, the nonlinear regression analysis of the percentage inhibitions was used to compute the IC50 mentioned in ref. 29.