TABLE 1.

Summary of gene edited traits in rice.

Gene	Effect of Gene on plant	Genome-editing system	References
DST	Salinity tolerance, osmotic tolerance	CRISPR-Cas9	Santosh Kumar et al. (2020)
OsFWL4	Grain yield, plant architecture, number of tillers, flag leaf area, grain length	CRISPR-Cas9	Gao et al. (2020)
BADH2	Enhanced fragrance	CRISPR-Cas9	Ashokkumar et al. (2020)
OsSPL16/qGW8	Grain yield, grain weight, grain size	CRISPR-Cas9	Usman et al. (2020a)
Cytochrome P450, OsBADH2	Grain yield, grain size, aroma (2-acetyl-1-pyrroline (2AP) content)	CRISPR-Cas9	Usman et al. (2020b)
OsWaxy	Decrease in amylose content (glutinous rice)	CRISPR-Cas9	Huang et al. (2020)
OsMYB30	Cold tolerance	CRISPR-Cas9	Zeng et al. (2019)
OsALS	confers herbicide resistance	Base Editor and CRISPR-Cas9	Li et al. (2019a)
OsSPL14	gene for ideal plan architecture	Base Editor	Hua et al. (2019)
BBM1	enables embryo formation from a fertilized egg	CRISPR-Cas9	Khanday et al. (2019)
REC8, PAIR, OSD1, and MTL	for heterozygosity fixation and haploid induction	CRISPR-Cas9	Wang et al. (2019a)
SF3B1	confers resistance to splicing inhibitors	CRISPR-direct evolution	Butt et al. (2019)
SD1	Grain yield, plant architecture,semi-dwarf plants, resistance to lodging	CRISPR-Cas9	Hu et al. (2019)
Gn1a, GS3	Grain yield, panicle architecture, number of grains per panicle, grain size	CRISPR-Cas9	Shen et al. (2018)
eIF4G	Rice tungro spherical virus (RTSV)	CRISPR-Cas9	Macovei et al. (2018)
GS9, DEP1	Slender grain shape, less chalkiness	CRISPR-Cas9	Zhao et al. (2018)
OsPDS and OsSBEIIB	encode phytoene desaturase and starch branching enzyme	CRISPR-Cas12a	Li et al. (2018a)
OSCDC48	regulates senescence and cell death	Base Editor (C-to-T substitution)	Zong et al. (2018)
elF4G	candidate rice tungro disease resistance gene	CRISPR-Cas9	Macovei et al. (2018)
Gn1a, GS3	grain yield	CRISPR-Cas9	Shen et al. (2018)
Gn1a, DEP1	grain yield	CRISPR-Cas9	Huang et al. (2018)
PYL1, PYL4, PYL6	control plant growth and stress responses	CRISPR-Cas9	Miao et al. (2018)
OsFAD2-1	converts oleic acid into linoleic acid	CRISPR-Cas9	Abe et al. (2018)
OsGA20ox2	Grain yield, plant architecture, semi-dwarf plants, reduced, gibberellins and flag leaf length	CRISPR-Cas9	Shen et al. (2018)
OsAnn3	Response to cold tolerance	CRISPR-Cas9	Shen et al. (2017)
OsSAPK2	Reduced drought, salinity, and osmotic stress, tolerance; role of gene in ROS scavenging	CRISPR-Cas9	Lou et al. (2017)
SBE1, SBEIIB	control amylose contents	CRISPR-Cas9	Sun et al. (2017)
OsNramp5	metal transporter gene	CRISPR-Cas9	Tang et al. (2017)
SAPK2	functions in ABA-mediated seed dormancy	CRISPR-Cas9	Lou et al. (2017)
GW2, 5 and 6	Grain yield, grain weight	CRISPR-Cas9	Xu et al. (2016)
GW2/GW5/TGW6	Increased grain length and width	CRISPR-Cas9	Xu et al. (2016)
OsERF922	responsible for rice blast resistance	CRISPR-Cas9	Wang et al. (2016)
Badh2	control rice fragrance	CRISPR-Cas9	Shan et al. (2015)
LOXs	affect seed storability	TALEN-based genome editing	Ma et al. (2015a)
OsSWEET13	bacterial blight susceptibility genes	CRISPR-Cas9	Zhou et al. (2015)
ROC5, SPP, YSA	Disruption results in albino phenotype	CRISPR-Cas9	Feng et al. (2013)
OsSWEET14	bacterial blight susceptibility genes	CRISPR-Cas9	Jiang et al. (2013)