Summary of MM/GBSA-based binding free energy contributions to the compound 47-HCV RdRp complexa.
Energy components (kcal mol−1) | |||||
---|---|---|---|---|---|
ΔEvdW | ΔEelec | ΔGgas | ΔGsolv | ΔGbind | |
HCV RdRp | −4537.81 ± 26.86 | −35 742.39 ± 139.77 | −4144.35 ± 146.43 | −7040.47 ± 115.57 | −11 184.82 ± 79.80 |
Compound 47 | −7.30 ± 2.0 | −9.39 ± 2.45 | 78.08 ± 6.48 | −37.53 ± 1.20 | 40.55 ± 6.36 |
Complex | −47.77 ± 2.92 | −160.62 ± 7.68 | −129.92 ± 8.14 | 60.94 ± 5.92 | −68.98 ± 4.55 |
ΔEelec: electrostatic, ΔEvdW: van der Waals, ΔGbind: calculated total free binding energy, ΔGgas: gas phase interaction, and ΔGsolv: solvation free energy.