TABLE 1.
Phylum | Family | Genus | Species |
Firmicutes | Staphylococcaceae | Staphylococcus↑ | |
Enterococcaceae↑ | Vagococcus↑ | ||
Enterococcus↑ | Enterococcus faecalis↑ | ||
Lactobacillaceae | Lactobacillus↓ | ||
Streptococcaceae↑ | Streptococcus↑ | Streptococcus anginosus↑, Streptococcus vestibularis↑, Streptococcus oralis↑ | |
Clostridiaceae | Clostridium↑ | Clostridium perfringens↑, Clostridium cluster XI↑, Clostridium XIVa↑ | |
Lachnospiraceae↓ | Coprococcus↓ | Coprococcus comes↓, Coprococcus spp.↓ | |
Blautia↓, Dorea↑, Anaerostipes↓ | |||
Ruminococcaceae↓ | Ruminococcus↓ | Faecalibacterium prausnitzii↓ | |
Eubacterium↓ | |||
Oscillospiraceae↓ | |||
Veillonellaceae↑ | Veillonella↑ | Veillonella atypica↑, Veillonella dispar↑, Veillonella sp.↑, Veillonella parvula↑ | |
Bacteroidetes | Bacteroidaceae↑/↓ | Bacteroides↓ | |
Porphyromonadaceae↓ | |||
Prevotellaceae↑/↓ | Prevotella↑/↓ | ||
Proteobacteria↑ | Enterobacteriaceae ↑ | Escherichia↑, Klebsiella↑, Enterobacter↑ | |
Pseudomonadaceae↑ | pseudomonadales↑ | ||
Campylobacteraceae | Campylobacter | Campylobacter sp.↑ | |
Pasteurellaceae↑ | Haemophilus parainfluenzae↑, Aggregatibacter segnis↑ | ||
Desulfobacteraceae | Desulfococcus↑ | ||
Actinobacteria | Atopobiaceae↑ | ||
Bifidobacteriaceae↓ | Bifidobacterium↓ | ||
Fusobacteria | Fusobacteriaceae↑ | Fusobacterium nucleatum↑, Cetobacterium↓ | |
Verrucomicrobia | Akkermansia muciniphila↓ |
↑/↓ indicated that different studies obtained conflicting results (Chen et al., 2011; Bajaj et al., 2014, 2015b; Qin et al., 2014; Arab et al., 2018; Ni et al., 2019; Ren et al., 2019; Albillos et al., 2020; Huang et al., 2020; Jiang et al., 2020; Lapidot et al., 2020; Trebicka et al., 2021).