REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit anti-HaloTag pAb | Promega | Cat# G9281; RRID:AB_713650 |
Anti-mNeonGreen nAb | Allele Biothechnology | Cat# ABP-NAB-MNGAB; RRID: AB_2629489 |
Chemicals | ||
JF585 | Laboratory of Luke D. Lavis | Grimm et al. (2017),Grimm et al. (2015),Grimm et al. (2016) |
JF646 | Laboratory of Luke D. Lavis | Grimm et al. (2017),Grimm et al. (2015),Grimm et al. (2016) |
DMSO | Sigma | D2650-5X5ML |
Genetic fragments | ||
GFP nano body | add gene | 89,367 |
6HNL | PDB | 6HNL |
6O2D | PDB | 6O2D |
8KY8 | PDB | 8KY8 |
3HON | PDB | 3HON |
3XF6 | PDB | 3XF6 |
6GWK | PDB | 6GWK |
3ZQM | PDB | 3ZQM |
5LFJ | PDB | 5LFJ |
3H5L | Huang et al. (2014) | 3H5L_2_mini |
HOTag3 | Thomson et al. (2014) | HOTag3 |
H protein | Sun et al. (2014) | H protein |
Yrb-1 | Parsons et al. (2002) | Yrb-1 |
AraD | Luo et al. (2001) | AraD |
Experimental models: Organisms/strains | ||
C. elegans wild-type strain | Caenorhabditis Genetics Center | N2 |
C.elegans transgenic strain expressing GFP::UTRO Genotype: xsSi3 [GFP::utrophin + Cbr-unc-119(+)] |
Tse et al. (2012) | MG589 |
C. elegans trains with endogenously tagged NMY-2::mKate2 Genotype: nmy-2(cp69[nmy-2::mkate2 + LoxP]) I |
Dickinson et al., (2017) | LP256 |
C.elegans strain with endogenously tagged mNG::PAR-3 Genotype: par-3(cp54[mNeonGreen::3xFlag::par-3]) III |
Dickinson et al. (2017) | LP242 |
C.elegans strain with endogenously tagged mSc::PAR-3 and transgenenic GFP::UTRO Genotype: par-3(djd18[EYFP-C1dPi::par-3]) III; xsSi3 [GFP::utrophin + Cbr-unc-119(+)] II |
this study | UTX136 |
C.elegans strain withendogenously tagged NMY-2::mKate and mNG::PAR-3 Genotype: nmy-2(cp52[nmy-2::mkate2 + LoxP unc-119(+) LoxP]) I; par-3(cp54[mNeonGreen::3xFlag::par-3]) III |
this study | LP636 |
C.elegans strain withendogenously tagged Halo::PAR-3 par-3(cp323[HaloTag-GLO PAR-3]) III | Dickinson et al. (2017) | LP621 |
C.elegans transgenic strain expressing GFPnAb::HaloTag Genotypes: djdIs19 [Psun-1::GFPnb::HALO::3xFlag + SEC] II |
this study | UTX44 |
C.elegans transgenic strain expressing nAb::HaloTag::6mer(HOTag3) Genotype:djdIs7 [Psun-1::GFPnb::HALO::3xFlag::HexamerD + SEC] II |
this study | UTX17 |
C.elegans transgenic strain expressing nAb::HaloTag::3mer(3H5L_2_mini) Genotype: djdIs11 [Piffb-1::GFPnb::HALO::3xFlag::TrimerD + SEC] II |
this study | UTX21 |
C.elegans transgenic strain expressing nAb::HaloTag::10mer(H protein) Genotype: djdIs15 [Piffb-1::GFPnb::HALO::3xFlag::DecamerD + SEC] II |
this study | UTX25 |
C.elegans strain with endogenously tagged YFP::PAR-3 Genotype: par-3(djd18[EYFP-C1dPi::par-3]) III |
this study | UTX52 |
C. elegans strain with RRKEEE mutations and an N-terminal YFP in endogenous par-3 Genotype: par-3(djd5 [EYFP-C1dPi::PAR-3(RRKEEE)]) III |
this study | UTX30 |
C.elegans transgenic strain expressing mNG::6HNL Genotype: djdIs22 [Pmex5::mNG::3XFLAG::6HNLdimer] II |
this study | UTX66 |
C.elegans transgenic strain expressing mNG::3HON Genotype: djdIs24 [Pmex5::mNG::3XFLAG::3HON3mer] II |
this study | UTX68 |
C.elegans transgenic strain expressing mNG::2XF6 Genotype: djdIs25 [Pmex5::mNG::3XFLAG::2XF6hexamer] II |
this study | UTX69 |
C.elegans transgenic strain expressing mNG::6GWK Genotype: djdIs27 [Pmex5::mNG::3XFLAG::GWKhexamer] II |
this study | UTX71 |
C.elegans transgenic strain expressing mNG::3ZQM Genotype: djdIs30 [Pmex5::mNG::3XFLAG::3ZQM10mer] II |
this study | UTX74 |
C.elegans transgenic strain expressing mNG::5LFJ Genotype: djdIs32 [Pmex5::mNG::3XFLAG::5LFJ12mer] II |
this study | UTX76 |
C. elegans strain with RRKEEE mutations and an N-terminal YFP in endogenous par-3 and trasgenic nAb::HaloTag::6mer(HOTag3) Genotype: djdIs7 [Psun-1::GFPnb::HALO::3xFlag::HexamerD + SEC] II; par-3(djd6) [EYFP-C1dPi::PAR-3(RRKEEE)] III |
this study | UTX47 |
C. elegans strain with RRKEEE mutations and an N-terminal YFP in endogenous par-3 and trasgenic nAb::Halo Genotype: djdIs21 [Psun-1::GFPnb::HALO::3xFlag + SEC] II; par-3(djd6 [EYFP-C1dPi::PAR-3(RRKEEE)]) III |
this study | UTX50 |
C.elegans transgenic strain expressing nAb::BFP::2mer(6HNL) Genotype: djdIs34 [Psun-1::GFPnb::mTagBFP2::6HNLdimer + SEC] II |
this study | UTX86 |
C.elegans transgenic strain expressing nAb::BFP::3mer(3HON) Genotype: djdIs35 [Psun-1::GFPnb::mTagBFP2::3HONtrimer + SEC] II |
this study | UTX88 |
C.elegans transgenic strain expressing nAb::BFP::4mer(AraD) Genotype:djdIs38 [Psun-1::GFPnb::mTagBFP2::AraD tetramer + SEC] II |
this study | UTX92 |
C.elegans transgenic strain expressing nAb::BFP::4mer(Yrb1) Genotype: djdIs39 [Psun-1::GFPnb::mTagBFP2::Yrb1 tetramer + SEC] II |
this study | UTX94 |
C.elegans transgenic strain expressing nAb::BFP::6mer(6GWK) Genotype: djdIs36 [Psun-1::GFPnb::mTagBFP2::2XF6hexamer + SEC] II |
this study | UTX89 |
C. elegans strain with RRKEEE mutations and an N-terminal YFP in endogenous par-3 and trasgenic nAb::BFP::2mer(6HNL) Genotype: djdIs34 [Psun-1::GFPnb::mTagBFP2::6HNLdimer + SEC] II; par-3(djd6 [EYFP-C1dPi::PAR-3(RRKEEE)]) III |
this study | UTX105 |
C. elegans strain with RRKEEE mutations and an N-terminal YFP in endogenous par-3 and trasgenic nAb::BFP::3mer(3HON) Genotype: djdIs34 [Psun-1::GFPnb::mTagBFP2::3HONtrimer + SEC] II; par-3(djd6 [EYFP-C1dPi::PAR-3(RRKEEE)]) III |
this study | UTX80 |
C. elegans strain with RRKEEE mutations and an N-terminal YFP in endogenous par-3 and trasgenic nAb::BFP::4mer(AraD) Genotype: djdIs38 [Psun-1::GFPnb::mTagBFP2::AraD tetramer + SEC] II; par-3(djd6 [EYFP-C1dPi::PAR-3(RRKEEE)]) III |
this study | UTX104 |
C. elegans strain with RRKEEE mutations and an N-terminal YFP in endogenous par-3 and trasgenic nAb::BFP::4mer(Yrb-1) djdIs34 [Psun-1::GFPnb::mTagBFP2::Yrb1 tetramer + SEC] II; par-3(djd6 [EYFP-C1dPi::PAR-3(RRKEEE)]) III | this study | UTX81 |
C. elegans strain with RRKEEE mutations and an N-terminal YFP in endogenous par-3 and trasgenic nAb::BFP::6mer(6GWK) Genotype: djdIs36 [Psun-1::GFPnb::mTagBFP2::6GWKhexamer + SEC] II; par-3(djd6 [EYFP-C1dPi::PAR-3(RRKEEE)]) III |
this study | UTX106 |
C.elegans transgenic strain expressing LsfGFP::SNAPf Genotype: cpIs95[Pmex-5>sfGFP-GLO::3xFlag::SNAPf + SEC] II |
this study | LP566 |
Software and Algorithms | ||
Utrack | Jaqaman et al. (2008) | Version 2.2.0; https://github.com/DanuserLab/u-track |
Msdanalyzer | Tarantino et al. (2014) | https://tinevez.github.io/msdanalyzer/ |
Ezyfit | MATLAB File Exchange | Version 2.53; http://www.fast.u-psud.fr/ezyfit |
GetClustersize | This paper | https://github.com/IvyChang1994/getClusterSize.git |
PIVLab | Thielicke and Stamhuis (2014) | Version 2.50; http://pivlab.blogspot.com |
PAR-3 diffusion simulation | This paper | https://github.com/IvyChang1994/Par3-Modeling.git |