Table 4.
AUC | VIP score | Severe | Non-severe | Non-severe | ||||||
---|---|---|---|---|---|---|---|---|---|---|
and severe | ||||||||||
Performance | All | Top 5 | Top 10 | >1.5 | ≥1.0 | p-value | p-value ≤0.01 | p-value | p-value ≤0.01 | p-value ≤0.01 |
markers | <0.01 | log2(FC) > |2.0| | <0.01 | log2(FC) > |2.0| | log2(FC) > |2.0| | |||||
Metabolites (n) | 43 | 5 | 10 | 5 | 15 | 10 | 7 | 18 | 2 | 9 |
AUC-ROC (100 CV) | 0.877 | 0.860 | 0.882 | 0.866 | 0.865 | 0.861 | 0.859 | 0.883 | 0.818 | 0.865 |
CI 95% (100 CV) | 0.827–0.946 | 0.805–0.908 | 0.824–0.932 | 0.801–0.929 | 0.803–0.921 | 0.801–0.926 | 0.794–0.918 | 0.824–0.939 | 0.738–0.897 | 0.791–0.927 |
AUC-ROC (25% holdout sample) | 0.894 | 0.889 | 0.899 | 0.875 | 0.853 | 0.875 | 0.850 | 0.919 | 0.792 | 0.870 |
Sensitivity (%) | 86.11 | 80.56 | 83.33 | 83.33 | 88.89 | 83.33 | 80.56 | 91.67 | 94.44 | 88.89 |
Specificity (%) | 76.92 | 73.08 | 80.77 | 76.92 | 76.92 | 80.77 | 76.92 | 73.08 | 57.69 | 69.23 |
Accuracy (%) | 81.52 | 76.82 | 82.05 | 80.13 | 82.91 | 82.05 | 78.74 | 82.37 | 76.07 | 79.06 |
Precision (%) | 83.78 | 80.56 | 85.71 | 83.33 | 84.21 | 85.71 | 82.86 | 82.50 | 75.56 | 80.00 |
FC, fold change; AUC, area under curve; SEN, sensitivity; SPE, specificity; PRE, precision; ACC, accuracy; CI, confidence interval; Best score in each ROC metric (sensitivity, specificity, precision and accuracy).
The metrics were obtained using different sets of metabolite biomarkers.