Table 3.
Genotypic characteristics of multidrug-resistant hypervirulent K. pneumoniae belonging to ST2096 obtained from short read assembly.
| Accession number and isolate ID | rmpA and/or rmpA2 | Capsule type | O antigen | Ybt, ICEKp | Resistance genes | Plasmids | Virulence genes |
|---|---|---|---|---|---|---|---|
|
JAARMH000000000 BA1602 |
rmpA2* | K64 | O1v1 | ybt14; ICEKp5 | aac(6)-Ib-cr, aadA2, armA, bla SHV-106 , bla CTX-M-15 ,bla OXA-1 , bla TEM-150 , fosA6, mphE, msrE, sul1, tetD, dfrA1, dfrA12, dfrA14 | ColKP3, IncFIBK, incFIB (pNDM-MAR), IncHI1B (pNDM-MAR) | fyuA, irp1, irp2, kfuAB, aerobactin, mrkABCDFHIJ |
|
JAAQTC000000000 BA25425 |
rmpA2* | K64 | O1v1 | ybt14; ICEKp5 | aadA2, armA, sat-2A, bla SHV-28 , bla CTX-M-15 ,bla OXA-1 , bla TEM-1D , bla OXA-232 , mphE, msrE, sul1, tetD, dfrA1, dfrA12, dfrA14 | ColKP3, ColRNAI, IncFIBK, IncFIB (pNDM-Mar), IncHI1B (pNDM-MAR) | fyuA, irp1, irp2, kfuABC, mrkABCDFHIJ |
|
JAAQSG000000000 BA28118 |
rmpA2* | K64 | O1v1 | ybt14; ICEKp5 | aadA2, armA, bla SHV-28 , bla CTX-M-15 , bla OXA-1 , bla TEM-1D , bla OXA-232 ,mphE, msrE, sul1, tetD, dfrA12, dfrA14 | IncFIBK, IncFIB(pNDM-Mar), ColKP3, ColBS512, IncHI1B (pNDM-MAR) | fyuA, irp1, irp2, aerobactin, kfuABC, mrkABCDFHIJ |
|
JAARNJ000000000 BA39100 |
rmpA2 | K64 | O1v1 | ybt14; ICEKp5 | aac(6)-lb-cr, aadA2, armA, sat2A, bla SHV-106 , bla CTX-M-15 , bla OXA-1 , bla TEM-1B , bla OXA-232 , catB, fosA6, mphE, msrE, sul1, tetD, dfrA1, dfrA12, dfrA14, | ColKP3, IncFIBK, IncFIB(pNDM-Mar), IncHI1B (pNDM-MAR) | fyuA, irp1, irp2, kfuA, kfuC, aerobactin, mrkABCDFHIJ |
|
JAAQSS00000000 BA10334 |
rmpA2* | K64 | O1v1 | ybt14; ICEKp5 | aac(6)-lb-cr, aadA2, armA, bla SHV , bla CTX-M-15 , bla OXA-1 , bla TEM-1A , bla OXA-232 , fosA, msrE, mphE, sul1, tetD, dfrA1, dfrA12, dfrA14 | ColKP3, IncHI1B (pNDM-MAR), IncFIB (pNDM_MAR), IncFIBK | fyuA, irp1, irp2,iutA, aerobactin, kfuABC, mrkABCDFHIJ |
rmpA2*, frameshift mutation.