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. 2022 Apr 27;13:883826. doi: 10.3389/fimmu.2022.883826

Table 2.

List of genes and identified mutations.

Pt Gene OMIM nr. Zygosity CHR Change in DNA Change in protein Detection modality Parental occurrence Class Biological profile Functional profile Diseases associated
1 ABCG8
NM_022437.2
605460 Compound heterozygous Chr2 c.1083G>A
c.1715T>C
p.Trp361*
p.Leu572Pro
HPO-terms No P
LP
ATP-bindingcassette (ABC) transporter Sterol homeostasis Sitosterolemia, Gallbladder disease
2 homozygous Chr2 c.1715T>C p.Leu572Pro HPO-terms - LP
3 ACTB
NM_001101.3
102630 Heterozygous Chr7 c.1084dup p.Tyr362Leu fs*2 BMF-filter - LP Cytoplasmic actin cell motility, contraction, gene transcription, DNA-repair, platelet activation/aggregation Dystonia, Juvenile-Onset, Baraitser-Winter Syndrome 1
4 FANCC
NM_000136.2
613899 Homozygous Chr9 c.67del p.Asp23Ile fs*23 BMF-filter - P DNA-repair protein Interstrand DNA cross-link repair Fanconi Anemia
5 GNE
NM_001128227.2
603824 Compound heterozygous Chr9 c.173C>T
c.491T>C
p.Pro58Leu
p.Ile146Thr
Trio-WES Yes P
LP
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase Regulates and initiates biosynthesis of N-acetylneuraminic acid (required for normal sialylation in hematopoietic cells) Nonaka Myopathy, Sialuria
6 HBB
NM_000518.4
141900 Heterozygous,
de novo
Chr11 c.425T>C p.Leu142Pro HPO-terms - P Hemoglobin subunit Oxygen transport, involved in megakaryocyte development and platelet production Beta-Thalassemia, Sickle Cell Anemia.
7 MPL
NM_005373.2
159530 Compound heterozygous Chr1 c.378del
c.1000T>C
p.Phe126Leufs*5
p.Cys334Arg
BMF-filter - P
LP
Thrombopoietin receptor Regulation of megakaryopoiesis and platelet production Myelofibrosis, Congenital amegakaryocytic thrombocytopenia
8 Homozygous Chr1 c.23T>G p.Met8Arg BMF-filter - LP
9 RPL35A
NM_000996.2
180468 Heterozygous Chr3 c.125A>G p.Tyr42Cys BMF-filter - P Ribosomal protein Proliferation and viability of hematopoietic cells Diamond-Blackfan Anemia
10 Heterozygous Chr3 c.82_84del p.Leu28del BMF-filter - P
11 SAMD9
NM_017654.3
610456 Heterozygous,
de novo
Chr7 c.773A>C p.Glu258Ala BMF-filter No LP Sterile alpha motif domain-containing protein Regulator of cell proliferation, apoptosis, inflammatory signaling, endosome fusion Mirage Syndrome, Familial tumoral calcinosis, Monosomy 7 myelodysplasia and leukemia syndrome
12 SRC
NM_005417.4
190090 Heterozygous,
de novo
Chr20 c.1579G>A p.Glu527Lys HPO-terms No P Proto-oncogene tyrosine-protein kinase Participates in embryonic development, cell growth, gene transcription, immune response, cell adhesion, cell cycle progression, apoptosis, migration, platelet activation/aggregation Thrombocytopenia, Colorectal cancer
13 TERT
NM_198253.2
187270 Compound heterozygous Chr5 c.2005C>T
c.3208G>A
p.Arg669Trp
p.Val1070Met
BMF-filter Yes P
VUS
Telomerase reverse transcriptase Chromosomal replication Dyskeratosis Congenita, Pulmonary fibrosis, Acute Myeloid Leukemia, Cutaneous Melanoma
14 Heterozygous,
de novo
Chr5 c.1796G>A p.Arg599Gln BMF-filter No LP

CHR, chromosome; P, pathogenic; LP, likely pathogenic; VUS, variant of unknown significance.