Table 2.
List of genes and identified mutations.
| Pt | Gene | OMIM nr. | Zygosity | CHR | Change in DNA | Change in protein | Detection modality | Parental occurrence | Class | Biological profile | Functional profile | Diseases associated |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 |
ABCG8
NM_022437.2 |
605460 | Compound heterozygous | Chr2 | c.1083G>A c.1715T>C |
p.Trp361* p.Leu572Pro |
HPO-terms | No | P LP |
ATP-bindingcassette (ABC) transporter | Sterol homeostasis | Sitosterolemia, Gallbladder disease |
| 2 | homozygous | Chr2 | c.1715T>C | p.Leu572Pro | HPO-terms | - | LP | |||||
| 3 |
ACTB
NM_001101.3 |
102630 | Heterozygous | Chr7 | c.1084dup | p.Tyr362Leu fs*2 | BMF-filter | - | LP | Cytoplasmic actin | cell motility, contraction, gene transcription, DNA-repair, platelet activation/aggregation | Dystonia, Juvenile-Onset, Baraitser-Winter Syndrome 1 |
| 4 |
FANCC
NM_000136.2 |
613899 | Homozygous | Chr9 | c.67del | p.Asp23Ile fs*23 | BMF-filter | - | P | DNA-repair protein | Interstrand DNA cross-link repair | Fanconi Anemia |
| 5 |
GNE
NM_001128227.2 |
603824 | Compound heterozygous | Chr9 | c.173C>T c.491T>C |
p.Pro58Leu p.Ile146Thr |
Trio-WES | Yes | P LP |
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase | Regulates and initiates biosynthesis of N-acetylneuraminic acid (required for normal sialylation in hematopoietic cells) | Nonaka Myopathy, Sialuria |
| 6 |
HBB
NM_000518.4 |
141900 | Heterozygous, de novo |
Chr11 | c.425T>C | p.Leu142Pro | HPO-terms | - | P | Hemoglobin subunit | Oxygen transport, involved in megakaryocyte development and platelet production | Beta-Thalassemia, Sickle Cell Anemia. |
| 7 |
MPL
NM_005373.2 |
159530 | Compound heterozygous | Chr1 | c.378del c.1000T>C |
p.Phe126Leufs*5 p.Cys334Arg |
BMF-filter | - | P LP |
Thrombopoietin receptor | Regulation of megakaryopoiesis and platelet production | Myelofibrosis, Congenital amegakaryocytic thrombocytopenia |
| 8 | Homozygous | Chr1 | c.23T>G | p.Met8Arg | BMF-filter | - | LP | |||||
| 9 |
RPL35A
NM_000996.2 |
180468 | Heterozygous | Chr3 | c.125A>G | p.Tyr42Cys | BMF-filter | - | P | Ribosomal protein | Proliferation and viability of hematopoietic cells | Diamond-Blackfan Anemia |
| 10 | Heterozygous | Chr3 | c.82_84del | p.Leu28del | BMF-filter | - | P | |||||
| 11 |
SAMD9
NM_017654.3 |
610456 | Heterozygous, de novo |
Chr7 | c.773A>C | p.Glu258Ala | BMF-filter | No | LP | Sterile alpha motif domain-containing protein | Regulator of cell proliferation, apoptosis, inflammatory signaling, endosome fusion | Mirage Syndrome, Familial tumoral calcinosis, Monosomy 7 myelodysplasia and leukemia syndrome |
| 12 |
SRC
NM_005417.4 |
190090 | Heterozygous, de novo |
Chr20 | c.1579G>A | p.Glu527Lys | HPO-terms | No | P | Proto-oncogene tyrosine-protein kinase | Participates in embryonic development, cell growth, gene transcription, immune response, cell adhesion, cell cycle progression, apoptosis, migration, platelet activation/aggregation | Thrombocytopenia, Colorectal cancer |
| 13 |
TERT
NM_198253.2 |
187270 | Compound heterozygous | Chr5 | c.2005C>T c.3208G>A |
p.Arg669Trp p.Val1070Met |
BMF-filter | Yes | P VUS |
Telomerase reverse transcriptase | Chromosomal replication | Dyskeratosis Congenita, Pulmonary fibrosis, Acute Myeloid Leukemia, Cutaneous Melanoma |
| 14 | Heterozygous, de novo |
Chr5 | c.1796G>A | p.Arg599Gln | BMF-filter | No | LP |
CHR, chromosome; P, pathogenic; LP, likely pathogenic; VUS, variant of unknown significance.