TABLE 1.
DNA preparations from bacterial strains and other sources included in the validation of the novel qPCR assay, Orien16S.
| Orientia tsutsugamushi strains (origin) | New Orientia agents (origin) | Other Rickettsiales agents | Other bacteria and controls | |
|
|
|
|
|
|
| n = 41 | n = 6 | n = 22 | n = 16 | |
| Karp (New Guinea) | Woods (Australia) | Ca. O. chuto (United Arab Emirates) | Rickettsia africae ESF-5 | Salmonella enterica |
| Kato (Japan) | Sido (Australia) | Ca. O. chiloensis Pt1 (Chile) | Rickettsia akari 29 | Proteus mirabilis |
| Gilliam (Burma) | BSR178 (New Zealand) | Ca. O. chiloensis Pt2 (Chile) | Rickettsia australis PHS | Escherichia coli |
| AFC-3 (Thailand) | Buie (New Guinea) | Ca. O. chiloensis Pt3 (Chile) | Rickettsia amblyommatis 85-1084 | Corynebacterium sp. |
| AFC-30 (Thailand) | Calcutta (India) | Ca. O. chiloensis Pt4 (Chile) | Rickettsia bellii G2D | Legionella pneumophila |
| AFPL-12 (Thailand) | Ikeda (Japan) | Ca. O. chiloensis Pt5 (Chile) | Rickettsia canadensis CA410 | Bartonella vinsonii |
| TA-678 (Thailand) | Kawasaki (South Korea) | Rickettsia conorii ITT | Bartonella quintana | |
| TA-686 (Thailand) | 18-032111 (Pakistan) | Rickettsia felis URRWXCal2 | Francisella persica | |
| TA-763 (Thailand) | 18-032460 (Malaysia) | Rickettsia honei TT-118 | Staphylococcus aureus | |
| TH-1812 (Thailand) | 18-030642 (China) | Rickettsia japonica NK | Borrelia burgdorferi | |
| TH-1814 (Thailand) | MAK-110 (China-Taiwan) | Rickettsia montanensis OSU 85-930 | Coxiella burnetii | |
| TH-1817 (Thailand) | MAK-119 (China-Taiwan) | Rickettsia parkeri C | Human DNA | |
| CRF136 (Thailand) | MAK-243 (China-Taiwan) | Rickettsia prowazekii Breinl | Mouse DNA 1 | |
| FPW1038 (Thailand) | TM1073 (Laos) | Rickettsia rhipicephali | Mouse DNA 2 | |
| FPW2016 (Thailand) | TM1324 (Laos) | Rickettsia rickettsii R | Mouse DNA 3 | |
| UT76 (Thailand) | Faulkner (Vietnam) | Rickettsia sibirica 246 | Mouse DNA 4 | |
| UT221 (Thailand) | Hicks (Vietnam) | Rickettsia slovaka Arm25 | ||
| UT661 (Thailand) | Middleton (Vietnam) | Rickettsia typhi Wilmington | ||
| Brown (Australia) | Volner (Philippines) | Anaplasma phagocytophilum | ||
| Citrano (Australia) | Ehrlichia chaffeensis | |||
| Domrow (Australia) | Neorickettsia risticii | |||
| Garton (Australia) | Neorickettsia sennetsu | |||