Table 1.
CUREs | Phase | Month | Activity | Details |
---|---|---|---|---|
#1 | Planning | 1–2 January to February 2021 | Reading primary literature Propose hypotheses Experimental design Online science communication with instructors | Search suitable clinical and laboratory technology to detect vaginal microorganism species community. Study culture of microorganism community techniques and high-through 16S rRNA gene amplicon sequencing to identify vaginal microorganism species between premenopausal and postmenopausal women. |
#2 | Implementing | 3–6 March to June in 2021 | Collect vaginal samples in the outpatient department | |
General bacterial culture techniques | Identify the 10 most abundant vaginal microorganism genera between the premenopausal and postmenopausal groups. | |||
16S rRNA gene sequencing | PCR amplification, OTU and community taxonomy system analysis at the genus level, COG-based functional structure distribution to identify species classification and analysis of colony differences at genus level. | |||
#3 | Summarizing | 7–10 July to October in 2021 | Data interpretation | Describe the outcome of abundance and diversity of microbial communities through 16S rRNA analysis. Compare differences in microorganism diversity in female vaginal fluids between the premenopausal and postmenopausal group. |
Statistical inference | Mann-Whitney U-tests and Benjamini-Hochberg false discovery rate correction for non-parametric data; paired t-test, chi-square test and one-way ANOVA for parametric data |
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Graphical inference | ||||
Collaborative writing manuscript | ||||
#4 | Feedback | 11–12 November to December in 2021 | For Students and instructors | Exposing feedback loops, facing obstacles, multiple connections among outcomes. |