Antibodies |
|
Phospho-eIF2a_Ser51 |
Cell Signaling Technology |
Cat# 3597; RRID:AB_390740
|
EIF2ΑK1/HRI |
Proteintech |
Cat# 20499-1-AP; RRID:AB_10697665
|
EIF2ΑK1/HRI |
Abcam |
Cat# ab28530; RRID:AB_869595
|
Anti-Bag3 |
Proteintech |
Cat# 10599-1-AP; RRID:AB_2062602
|
β-actin |
Novus |
Cat# NB600-501; RRID:AB_10077656
|
a-K48 Ubiquitin linkage antibody |
BostonBiochem |
Cat#A101-050; RRID:AB_2894847
|
|
Chemicals, peptides, and recombinant proteins |
|
JG98 |
AdooQ BIOSCIENCE |
Catalog No.: A18734 |
MG132 |
Biomol |
LKT-M2400.5 |
DAPI (4′,6-Diamidine-2′-phenylindole dihydrochloride) |
Sigma |
Cat# 10236276001 |
Formaldehyde |
Sigma |
Cat#FX0415 |
Blasticidin S HCl |
Thermo Fisher |
Cat# A1113903 |
Recombinant Human His6-Ubiquilin-1 Tandem UBA |
BostonBiochem |
UBE110 |
Qiagen RNeasy Plus Mini kit |
Qiagen;GmbH |
Cat. #74134 |
qScript cDNA Synthesis Kit |
Quanta Bio |
Cat. #95047-100 |
PerfeCTa SYBR Green FastMix ROX |
Quanta Bio |
Cat. #95073-012 |
DMEM/F-12 1:1 |
BI-Biologicals |
Cat# 01-170-1A |
horse serum |
BI-Biologicals |
Cat. #04-0041A |
epidermal growth factor |
Peprotech |
Cat. #AF-100-15 |
Hydrocortisone |
Sigma |
Cat. #H-0888 |
human insulin |
Sigma |
Cat. #I9278 |
cholera toxin |
Sigma |
Cat. #C-8052 |
Fetal Bovine Serum |
BI-Biologicals |
Cat. #04-007-1A |
L-glutamine |
BI-Biologicals |
Cat. #03-020-1B |
L-alanyl-L-glutamine |
BI-Biologicals |
Cat. #03-022-1B |
Penstrep |
BI-Biologicals |
Cat. #03-031-1B |
HisPur Ni-NTA Resin |
ThermoFisher Scientific |
Cat. #88221 |
RNeasy Mini kit |
Qiagen |
Cat. #74104 |
|
Deposited data |
|
Transcriptome analysis |
GEO |
GSE171440 |
|
Experimental models: cell lines |
|
MCF10A (human breast epithelial) |
ATCC |
Cat# CRL-10317; RRID:CVCL_0598 |
HEK293T |
ATCC |
Cat# CRL-3216, RRID:CVCL_0063 |
|
Oligonucleotides |
|
Supplement table |
See Tables S3 and S4
|
N/A |
|
Software and algorithms |
|
Hermes Wiscon Imaging System with Athena Winsoft software package (V1.0.10) |
IDEA Bio-Medical Ltd |
RRID:SCR_021786
|
Fiji-ImageJ |
ImageJ |
RRID:SCR_002285
|
limma package |
R-package |
LIMMA, RRID:SCR_010943
|
Gene Set Enrichment Analysis |
Broad Institute |
RRID:SCR_003199
|
GraphPad Prism_v9 |
GraphPad Software Inc |
GraphPad Prism, RRID:SCR_002798
|
trim_galore_v0.5.0 |
Babraham Bioinformatics |
Trim Galore, RRID:SCR_011847
|
FastQC_v0.11.7 |
Babraham Bioinformatics |
FastQC, RRID:SCR_014583
|
Hisat2_v2.1.0 |
daehwankimlab |
HISAT2, RRID:SCR_015530
|
GRch38.97 |
UCSC |
NA |
samtools_v1.9 |
N/A |
SAMTOOLS, RRID:SCR_002105
|
featureCounts_v1.6.3 |
N/A |
featureCounts, RRID:SCR_012919
|
Bioconductor packages |
Bioconductor |
RRID:SCR_006442
|