Table 1.
Novel non-synonymous SNPs at the sentinel sites. All novel mutations have been cited under the domains of the kelch propeller region showing the codons with the mutation, the base changes and the sentinel site where they were observed.
Domains | Codons | Reference amino acid | Observed amino acid | Mutation | Specific base change | Site |
---|---|---|---|---|---|---|
BTB/POZ | 404 | R | G | AGA → GGA | A → G | Wa |
411 | R | K | AGA → AAA | G → A | Hohoe | |
412 | N | I | AAT → ATC | AT → TC | Navrongo | |
412 | N | S | AAT → AGT | A → G | Begoro | |
413 | P | H | CCG → CAC | CG → AC | Hohoe | |
422 | L | F | TTC → CTC | T → C | Wa | |
431 | E | Q | GAA → CAA | G → C | Hohoe | |
432 | A | T | GCA → ACA | G → A | Hohoe | |
442 | F | L | TTC → CTC | T → C | Hohoe | |
Blade 1 | 445 | V | L | GTA → CTA | G → C | Begoro, Wa |
455 | E | K | GAA → AAA | G → A | Hohoe, Koforidua, Wa | |
456 | Y | N | TAT → AAT | T → A | Accra | |
458 | N | D | AAT → GAT | A → G | Koforidua | |
458 | N | I | AAT → ATT | A → T | Koforidua | |
458 | N | H | AAT → CAT | A → C | Koforidua | |
461 | E | G | GAA → GGA | A → G | Accra | |
469 | C | R | TGC → CGC | T → C | Cape Coast | |
470 | W | R | TGG → CGG | T → C | Cape Coast | |
473 | C | W | TGT → TGG | T → G | Cape Coast | |
473 | C | S | TGT → TCT | G → C | Hohoe | |
Blade 2 | 485 | S | G | AGT → GGT | A → G | Koforidua |
488 | L | F | TTG → TTC | G → C | Cape Coast, Hohoe | |
494 | V | I | GTT → ATT | G → A | Hohoe | |
499 | N | T | AAC → ACC | A → C | Hohoe | |
510 | V | G | GTG → GGG | T → G | Navrongo | |
510 | V | L | GTG → TTG | G → T | Wa | |
522 | S | R | AGT → AGG | T → G | Cape Coast | |
Blade 3 | 523 | N | K | AAT → AAA | T → A | Sunyani |
529 | R | K | AGA → AAA | G → A | Cape Coast | |
529 | R | I | AGA → ATA | G → T | Koforidua | |
530 | N | I | AAT → ATT | A → T | Sunyani | |
530 | N | S | AAT → TCA | AAT → TCA | Koforidua | |
532 | C | S | TGT → AGT | T → A | Begoro | |
536 | S | A | TCA → GCA | T → G | Bekwai | |
547 | D | E | GAT → GAA | T → A | Cape Coast | |
547 | D | N | GAT → AAT | G → A | Hohoe | |
554 | N | P | AAT → CCT | AA → CC | Accra | |
554 | N | T | AAT → ACT | A → C | Hohoe | |
555 | V | A | GTA → GCA | T → C | Sunyani | |
556 | E | D | GAA → GAT | A → T | Sunyani | |
559 | D | Y | GAT → TAT | G → T | Navrongo | |
565 | W | R | TGG → CGC | TG → CC | Begoro | |
569 | A | P | GCA → CCA | G → C | Wa | |
Blade 4 | 578 | A | P | GCT → CCT | G → C | Wa |
579 | M | T | ATG → ACG | T → C | Koforidua | |
579 | M | Y | ATG → TAT | ATG → TAT | Cape Coast | |
580 | C | V | TGT → GTG | TGT → GTG | Cape Coast | |
580 | C | R | TGT → CGT | T → C | Begoro | |
584 | D | L | GAT → TTG | GAT → TTG | Koforidua | |
585 | N | H | AAT → CAT | A → C | Hohoe | |
585 | N | I | AAT → ATA | AT → TA | Koforidua | |
587 | I | T | ATT → ACT | T → C | Cape Coast | |
587 | I | N | ATT → AAT | T → A | Cape Coast, Koforidua | |
590 | I | T | ATT → ACT | T → C | Navrongo | |
598 | L | I | TTA → ATA | T → A | Bekwai | |
605 | E | D | GAA → GAC | A → C | Cape Coast | |
615 | P | L | CCA → CTA | C → T | Cape Coast | |
Blade 5 | 616 | Y | H | TAT → CAT | T → C | Koforidua |
619 | L | V | TTA → GTA | T → G | Begoro | |
623 | S | N | AGT → AAT | G → A | Cape Coast | |
628 | F | L | TTT → CTT | T → C | Cape Coast | |
628 | F | L | TTT → TTA | T → A | Hohoe, Koforidua | |
633 | Q | H | CAA → CAT | A → T | Accra | |
640 | I | F | ATT → TTT | A → T | Cape Coast | |
640 | I | S | ATT → AGT | T → G | Begoro | |
643 | E | D | GAA → GAC | A → C | Cape Coast | |
646 | I | K | ATA → AAA | T → A | Cape Coast | |
648 | D | Y | GAT → TAT | G → T | Sunyani | |
661 | Q | L | CAA → CTA | A → T | Cape Coast, Koforidua | |
661 | Q | G | CAA → GCA | CA → GC | Koforidua | |
664 | N | H | AAT → CAT | A → C | Cape Coast | |
Blade 6 | 668 | E | D | GAG → GAT | G → T | Cape Coast, Koforidua |
669 | K | E | AAA → GAA | A → G | Cape Coast, Koforidua | |
669 | K | N | AAA → AAC | A → C | Koforidua | |
672 | N | I | AAT → ATT | A → T | Cape Coast, Koforidua | |
690 | G | D | GGC → GAC | G → A | Cape Coast, Koforidua | |
692 | V | L | GTT → CTT | G → C | Cape Coast | |
696 | C | S | TGT → AGT | T → A | Cape Coast |