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FarmCPU GWAS for ADIFF. (a) Manhattan plots of the GWAS based on SNPs and Indels. (b) Difference analysis of the strongest significant SNP (rs322863105) on SSC17 in GLM, which was retested in FarmCPU. (c) Haplotype block analysis of selected suggestive significant SNPs associated with ADIFF on SSC17 in GLM, including rs322863105. ADIFF: the absolute difference between left and right teat number (ADIFF = |LTN − RTN|).
