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. 2022 May 10;10:e13379. doi: 10.7717/peerj.13379

Table 1. PCR conditions of rs1256049, rs4986938, rs1256030 polymorphisms in the ESR2 gene.

rs1256049 (+1082G/A, exon 5) rs4986938 (+1730G/A, 3′UTR, exon 8) rs1256030T/C (Intron 2)
*PCR Primers: sense
antisense
5′-TTGCGCAGCTTAACTTCAAA-3′
5′-ACCTGTCCAGAACAAGATCT-3′
5′-CAATGCATATCCTGCCTGTG-3′
5′-GGTTTAGGGGTGGGGTAGACTG-3′
5′-CAATGCATATCCTGCCTGTG-3′
5′-TCCCGGAAATCTGATACAGC-3′
PCR product size 321 bp 442 bp 251 bp
PCR conditions Buffer enzyme 1X, 7.5 pmol of each primer, 0.2 mM of dNTPs, 2.0 mM of MgCl2, 2.5 u of Taq polymerase, 100 nM of genomic DNA Buffer enzyme 1X, 7.5 pmol of each primer, 0.2 mM of dNTPs, 2.0 mM of MgCl2, 2.5 u of Taq polymerase, 100 nM of genomic DNA Buffer enzyme 1X, 7.5 pmol of each primer, 0.2 mM of dNTPs, 2.5 mM of MgCl2, 2.5 u of Taq polymerase, 100 nM of genomic DNA
Annealing PCR temperature 60 °C 55 °C 57 °C
Recognition enzyme restriction RsaI, 37 °C, (5′…GT↓AC…3′) AluI, 37 °C, (5′…AG↓CT…3′) AluI, 37 °C, (5′…AG↓CT…3′)
**Allele identified:
(Wild type)
(Polymorphic type)
G: 321
A: 211 + 110
G: 442
A: 336 + 106
C: 227 + 24
T: 147 + 80 + 24

Notes:

*

The primers previously described (Mahdavipour et al., 2017).

**

The genotypes were identified in 6% polyacrylamide gels (29:1), followed by silver nitrate staining.