Table 1. PCR conditions of rs1256049, rs4986938, rs1256030 polymorphisms in the ESR2 gene.
| rs1256049 (+1082G/A, exon 5) | rs4986938 (+1730G/A, 3′UTR, exon 8) | rs1256030T/C (Intron 2) | |
|---|---|---|---|
|
*PCR Primers: sense antisense |
5′-TTGCGCAGCTTAACTTCAAA-3′ 5′-ACCTGTCCAGAACAAGATCT-3′ |
5′-CAATGCATATCCTGCCTGTG-3′ 5′-GGTTTAGGGGTGGGGTAGACTG-3′ |
5′-CAATGCATATCCTGCCTGTG-3′ 5′-TCCCGGAAATCTGATACAGC-3′ |
| PCR product size | 321 bp | 442 bp | 251 bp |
| PCR conditions | Buffer enzyme 1X, 7.5 pmol of each primer, 0.2 mM of dNTPs, 2.0 mM of MgCl2, 2.5 u of Taq polymerase, 100 nM of genomic DNA | Buffer enzyme 1X, 7.5 pmol of each primer, 0.2 mM of dNTPs, 2.0 mM of MgCl2, 2.5 u of Taq polymerase, 100 nM of genomic DNA | Buffer enzyme 1X, 7.5 pmol of each primer, 0.2 mM of dNTPs, 2.5 mM of MgCl2, 2.5 u of Taq polymerase, 100 nM of genomic DNA |
| Annealing PCR temperature | 60 °C | 55 °C | 57 °C |
| Recognition enzyme restriction | RsaI, 37 °C, (5′…GT↓AC…3′) | AluI, 37 °C, (5′…AG↓CT…3′) | AluI, 37 °C, (5′…AG↓CT…3′) |
|
**Allele identified: (Wild type) (Polymorphic type) |
G: 321 A: 211 + 110 |
G: 442 A: 336 + 106 |
C: 227 + 24 T: 147 + 80 + 24 |
Notes:
The primers previously described (Mahdavipour et al., 2017).
The genotypes were identified in 6% polyacrylamide gels (29:1), followed by silver nitrate staining.