Figure 6.

Homodimers of viral genomes. (A, top) Coverage of overlapping chimeras in Zika virus identified by COMRADES (Ziv et al. 2018). The regions with the largest coverage of homodimers are indicated by asterisks. (Bottom) Predicted secondary structures of regions with high coverage of overlapping chimeras. The colors indicate the COMRADES score, that is, the log₂ of the number of chimeric reads supporting each base pair. (B) Coverage of overlapping chimeras along the SARS-CoV-2 genome identified by COMRADES (Ziv et al. 2020). The top homodimeric regions and their predicted structures are shown, as described above. (C) Known types of RNA homodimers.