| Abbreviation | Meaning |
| Alt-NHEJ | Alternative non-homologous end joining |
| ALT | Alternative lengthening of telomeres |
| ALT+ | ALT pathway-positive |
| ATRX | Alpha-thalassemia/mental retardation X-linked chromatin remodeler |
| APB | ALT -associated PML body |
| APBs | ALT-associated PML bodies |
| BIR | Break-induced replication |
| BTR | BLM-TOP3α-RMI1-RMI2 |
| c-NHEJ | Classical non-homologous end joining |
| CST | CTC1-STN1-TEN1 |
| DAXX | Death domain-associated protein |
| DDR | DNA damage response |
| DSBs | Double-strand breaks |
| D-loop | DNA displacement loop |
| ECTRs | Extrachromosomal telomeric repeats |
| HJ | Holliday junction |
| HP1α | Heterochromatin protein 1 |
| HR | Homologous recombination |
| I-loops | Internal loops |
| KAP1 | KRAB-associated protein 1 |
| LLPS | Liquid–liquid phase separation |
| MiDAS | Mitotic DNA synthesis |
| PARP | Poly (ADP-ribose) polymerase |
| PCNA | Proliferating cell nuclear antigen |
| PML | Promyelocytic leukemia |
| RFC | Replication factor C |
| SIM | SUMO-interacting motif |
| SMX | SLX1-SLX4, MUS81-EME1, and XPF-ERCC1 |
| ssDNA | Single-strand DNA |
| T-circle | Telomere circle |
| TERC | Telomerase RNA component |
| TERRA | Telomeric repeats containing RNA |