Table 2. SNPs remaining after filtering for minor allele frequency and pruning based on linkage disequilibrium.
| SNP | Location | Reference allele | Minor allele frequency |
|---|---|---|---|
| rs28652778 | 19194995 | A | 0.20 |
| rs28405179 | 19195143 | A | 0.03 |
| rs111289603 | 19195492 | G | 0.03 |
| kgp2515954 | 19195951 | A | 0.02 |
| rs77608580 | 19196968 | A | 0.04 |
| rs9699485 | 19197237 | G | 0.02 |
| rs3935824 | 19197849 | G | 0.18 |
| rs28665699 | 19200185 | A | 0.03 |
| rs28493067 | 19203333 | A | 0.35 |
| rs6426814 | 19204173 | A | 0.19 |
| rs35285457 | 19205258 | A | 0.14 |
| rs7365978 | 19206020 | A | 0.21 |
| rs28508407 | 19210018 | A | 0.27 |
| rs113232075 | 19211163 | G | 0.02 |
| rs9426718 | 19213022 | A | 0.02 |
| rs4911985 | 19215440 | G | 0.22 |
| rs28582076 | 19217295 | G | 0.02 |
| rs11484743 | 19219987 | C | 0.02 |
| rs17492518 | 19221621 | A | 0.04 |
| rs4912044 | 19230263 | A | 0.18 |
| rs79251057 | 19231130 | A | 0.04 |