Table 1.
Cell type | Gene markers | Cor | p | |
---|---|---|---|---|
B cell | CD19 | 0.238 | 0.000008 | *** |
CD79A | 0.167 | 0.001880 | ** | |
T cell | CD3D | 0.303 | 0.000000 | *** |
CD3E | 0.24 | 0.000007 | *** | |
CD2 | 0.223 | 0.000029 | *** | |
CD8+ T cell | CD8A | 0.205 | 0.000128 | *** |
CD8B | 0.208 | 0.000099 | *** | |
Th1 | T-bet | 0.096 | 0.074700 | |
IL-2 | 0.116 | 0.031700 | * | |
IFN-γ | 0.243 | 0.000005 | *** | |
TNF | 0.272 | 0.000000 | *** | |
Th2 | GATA3 | 0.261 | 0.000001 | *** |
STAT5A | 0.242 | 0.000005 | *** | |
IL13 | 0.178 | 0.000896 | *** | |
Th17 | STAT3 | 0.147 | 0.006170 | ** |
IL17A | 0.08 | 0.137000 | ||
Tfh | BCL6 | 0.212 | 0.000075 | *** |
IL21 | 0.071 | 0.189000 | ||
Treg | FOXP3 | 0.214 | 0.000061 | *** |
CCR8 | 0.312 | 0.000000 | *** | |
STAT5B | 0.187 | 0.000495 | *** | |
TGFβ | 0.325 | 0.000000 | *** | |
T cell exhaustion | PD-1 | 0.237 | 0.000009 | *** |
CTLA-4 | 0.359 | 0.000000 | *** | |
LAG3 | 0.274 | 0.000000 | *** | |
TIM-3 | 0.379 | 0.000000 | *** | |
GZMB | 0.152 | 0.004630 | ** | |
TOX | 0.228 | 0.000019 | *** | |
TIGIT | 0.305 | 0.000000 | *** | |
TAM | CCL2 | 0.232 | 0.000013 | *** |
CD68 | 0.205 | 0.000122 | *** | |
IL10 | 0.239 | 0.000007 | *** | |
M1 macrophage | iNOS | 0.087 | 0.109000 | n.s. |
IRF5 | 0.366 | 0.000000 | *** | |
COX2 | 0.276 | 0.000000 | *** | |
M2 macrophage | CD163 | 0.109 | 0.042400 | * |
VSIG4 | 0.185 | 0.000547 | *** | |
MS4A4A | 0.172 | 0.001380 | ** | |
Neutrophils | CD66b | 0.094 | 0.081200 | n.s. |
CD11b | 0.337 | 0.000000 | *** | |
NK | CD16 | 0.330 | 0.000000 | *** |
CD56 | 0.346 | 0.000000 | *** | |
DC | CD1c | 0.103 | 0.057100 | n.s. |
CD83 | 0.37 | 0.000000 | *** | |
CD209 | 0.104 | 0.053600 | n.s. | |
MHCII | 0.219 | 0.000042 | *** | |
Monocyte | CD14 | -0.301 | 0.000000 | *** |
CD64 | 0.338 | 0.000000 | *** | |
CD15 | 0.368 | 0.000000 | *** |
LIHC, liver hepatocellular carcinoma; Tfh, follicular helper T cell; Th, T helper cell; Treg, regulatory T cell; TAM, tumor associated macrophage; NK, natural killer cell; DC, dendritic cell; Cor, R value of Spearman’s correlation. *P < 0.05, **P < 0.01, ***P < 0.001.
n.s. "no significance".