Input and IP dilution factors
Input dilution factor relative to IP |
Input and IP individual dilution factors at each step |
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---|---|---|---|---|
Step | Input | IP | Input | IP |
RNA extraction starting material | ×0.1 | 1 | ×0.1 | ×1 |
RNA extraction final volume | ×1.212 | 1 | ×1.212 | ×1 |
DNase | TBD, maximum is ×0.991 (max = 26 μL of RNA samples = 86.67% of total volume) | 1 (87.5% of total volume of RNA sample) | Max × 0.867 | ×0.875 |
RT | ×0.105 (10% of DNase; 3 μL) | 1 (95.71% of DNase) | ×0.1 | ×0.957 |
qPCR | ×0.06 (50-fold) | 1 (3-fold) | ×0.02 | ×0.33 |
plate | 1 (5 μL/25 μL total, per well) | 1 (5 μL/25 μL total, per well) | ×1 | ×1 |
“Total dilution factor” | ×0.00076 (7.6 × 10-4) | 1 | ×0.00021 | ×0.276 |
IN/IP relative dilution factor∗ | ×0.00076 (7.6 × 10-4) | ×0.00076052219 (7.6 × 10-4) |
For each IP, we use 0.00076-times less input (0.076%). Thus, the IP/IN ratio must be multiplied by 0.00076 ([IP value] × 1)/([input value] × 7.6 × 10-4)]