Table 1.
Primer and probe sequences for vtg, tbp, hprt1 and rpl8 recorded 5′ to 3′. References are GenBank accession numbers for sequence used to design primers and probes or publication they were copied from. See Supplementary Information Section 2 for details on vtg. Primers with MGB probes were designed using PrimerExpress v3.0.1 (Applied Biosystems, USA).
| Primer Name | Sequence 5’ – 3’ | Final RT-qPCR concentration (nM) | Amplicon (bp)/qPCR Efficiency | Reference |
|---|---|---|---|---|
| vtg Q F3738 | CACCACATACGCCAAAAAGCT | 250 | 67 / 94% | AF130354.1 |
| vtg Q R3805 | CAAGTCTAAAGCCCGTCTGGTT | 250 | ||
| vtg Q PB3766 | 6FAM-CACATTCCTATGGCGGC-MGBNFQ | 300 | ||
| hprt1 Q F422 | ATTCCGATGACAGTGGACTTCA | 300 | 65 / 92% | DT085800.1 |
| hprt1 Q R487 | GATGTCACCTGTAGATTGGTCATTTT | 300 | ||
| hprt1 Q PB445 | 6FAM-CCGACTCAAGAGTTAC-MGBNFQ | 250 | ||
| tbp Q F657 | AGGAGCCAAAAGTGAGGAACAG | 300 | 60 / 93% | DT344258.1 |
| tbp Q R717 | CTGCACCACTCTGGCATATTTC | 300 | ||
| tbp Q PB680 | 6FAM-CCCGATTGGCAGCCA-MGBNFQ | 250 | ||
| rpl8 Q F84 | TCAAGGGGATTGTGAAGGAC | 100 | 72 / 92% | Flick et. al. 2014 |
| rpl8 Q R156 | TCACGGAAAACCACCTTAGC | 100 |