Table 1. Primers and amplicon sizes of the amplified products and specific annealing temperatures.
| M.Os | Target gene | Primers sequences | Amplicon size (bp) | Amplification (35 cycles) | ||
|---|---|---|---|---|---|---|
| Denaturation | Annealing | Extension | ||||
| E. coli | fimH | TGCAGAACGGATAAGCCGTGG GCAGTCACCTGCCCTCCGGTA |
508 | 94°C 30 seconds |
50°C 45 seconds |
72°C 45 seconds |
| papC | TGATATCACGCACTCAGTAGC CCGGCCATATTCACATAA |
501 | 94°C 30 seconds |
58°C 40 seconds |
72°C 45 seconds |
|
| iss | ATGTTATTTTCTGCCGCTCTG CTATTGTGAGCAATATACCC |
226 | 94°C 30 seconds |
54°C 30 seconds |
72°C 30 seconds |
|
| iutA | GGCTGGACATGGGAACTGG CGTCGGGAACGGGTAGAATCG |
300 | 94°C 30 seconds |
63°C 30 seconds |
72°C 30 seconds |
|
| blaCTX-M | ATG TGC AGY ACC AGT AAR GTK ATG GC TGG GTR AAR TAR GTS ACC AGA AYC AGC GG |
593 | 94°C 30 seconds |
54°C 40 seconds |
72°C 45 seconds |
|
| bla TEM | ATCAGCAATAAACCAGC CCCCGAAGAACGTTTTC |
516 | 94°C 30 seconds |
54°C 40 seconds |
72°C 45 seconds |
|
| tetA | GGTTCACTCGAACGACGTCA CTGTCCGACAAGTTGCATGA |
576 | 94°C 30 seconds |
50°C 40 seconds |
72°C 45 seconds |
|
| S. aureus | mecA | GTA GAA ATG ACT GAA CGT CCG ATA A CCA ATT CCA CAT TGT TTC GGT CTA A |
310 | 94°C 30 seconds |
50°C 30 seconds |
72°C 40 seconds |
| coa | ATA GAG ATG CTG GTA CAG G GCT TCC GAT TGT TCG ATG C |
630 | 94°C 30 seconds |
55°C 40 seconds |
72°C 40 seconds |
|
| spa | TCA ACA AAG AAC AAC AAA ATG C GCT TTC GGT GCT TGA GAT TC |
226 | 94°C 30 seconds |
50°C 30 seconds |
72°C 40 seconds |
|
| tetK | GTAGCGACAATAGGTAATAGT GTAGTGACAATAAACCTCCTA |
364 | 94°C 30 seconds |
54°C 40 seconds |
72°C 40 seconds |
|