Table 3.

The antigenic epitopes predicted by the EMBOSS antigenic detection program in SARS-CoV-2 and Omicron, Alpha, Beta, Gamma, Delta, and Mu variants. The epitopes are in descending order of predicted scores.

Virus	#	Sequence	length	score	Max_score_pos
SARS-CoV-2	1	GYQPYRVVVLSFELLHAPATV	171->191	1.214	177
	2	ISNCVADYSVLYNSA	25->39	1.183	31
	3	GFNCYFPLQSYGF	152->164	1.144	158
	4	LNDLCFTNVYADSFVIRG	54->71	1.14	60
	5	FTGCVIAW	96->103	1.126	99
Omicron	1	TYGVGHQPYRVVVLSFELLHAPATV	167->191	1.214	177
	2	ISNCVADYSVLYNLAPFFTFKCYGVSPT	25->52	1.183	31
	3	LNDLCFTNVYADSFVIRG	54->71	1.14	60
	4	FTGCVIAW	96->103	1.126	99
	5	GFNCYFPLRSYSFR	152->165	1.123	158
Alpha	1	TYGVGHQPYRVVVLSFELLHAPATV	167->191	1.214	177
	2	ISNCVADYSVLYNSA	25->39	1.183	31
	3	GFNCYFPLQSYGFQ	152->165	1.144	158
	4	LNDLCFTNVYADSFVIRG	54->71	1.14	60
	5	FTGCVIAW	96->103	1.126	99
Beta	1	GYQPYRVVVLSFELLHAPATV	171->191	1.214	177
	2	ISNCVADYSVLYNSA	25->39	1.183	31
	3	GFNCYFPLQSYGFQ	152->165	1.144	158
	4	LNDLCFTNVYADSFVIRG	54->71	1.14	60
	5	FTGCVIAW	96->103	1.126	99
Gamma	1	GYQPYRVVVLSFELLHAPATV	171->191	1.214	177
	2	ISNCVADYSVLYNSA	25->39	1.183	31
	3	GFNCYFPLQSYGFQ	152->165	1.144	158
	4	LNDLCFTNVYADSFVIRG	54->71	1.14	60
	5	FTGCVIAW	96->103	1.126	99
Delta	1	GYQPYRVVVLSFELLHAPATV	171->191	1.214	177
	2	ISNCVADYSVLYNSA	25->39	1.183	31
	3	GFNCYFPLQSYGF	152->164	1.144	158
	4	LNDLCFTNVYADSFVIRG	54->71	1.14	60
	5	FTGCVIAW	96->103	1.126	99
Mu	1	TYGVGYQPYRVVVLSFELLHAPATV	167->191	1.214	177
	2	ISNCVADYSVLYNSA	25->39	1.183	31
	3	GFNCYFPLQSYGFQ	152->165	1.144	158
	4	LNDLCFTNVYADSFVIRG	54->71	1.14	60
	5	FTGCVIAW	96->103	1.126	99