Table 2.

Pleiotropic SNPs for both LS BMD and BW

	SNP	Nearby gene	CHR	cFDR.LS	cFDR.BW	ccFDR
1	rs12197879	CCDC170	6	1.01E − 06	2.55E − 02	2.55E − 02
2	rs1293935	CCDC170	6	3.95E − 06	2.80E − 09	3.95E − 06
		ESR1
3	rs34955778	NTAN1	16	3.59E − 02	1.60E − 02	3.59E − 02
		PDXDC1
4	rs198542	CACNA1G	17	1.49E − 02	1.74E − 02	1.74E − 02
5	rs2423512	JAG1	20	8.36E − 03	9.41E − 06	8.36E − 03
		FAT1P1

SNP single nucleotide polymorphisms, CHR chromosome, cFDR.LS conditional false discovery rate of LS BMD when conditioned on BW, cFDR.BW conditional false discovery rate of BW when conditioned on LS BMD, ccFDR conjunction conditional false discovery rate