TABLE 3.
Primers used to amplify the R. salmoninarum msa, hly, and rsh genes and the 16S-23S rDNA spacer region
| Gene or region | Size of PCR prod-uct (bp) | Primer
|
|
|---|---|---|---|
| Designation | Sequence (5′-3′) | ||
| msa | 487 | Rs57+127 | TCGCAAGGTGAAGGGAATTCTTCC |
| Rs57−611 | GGTTTGTCTCCAAAGGAGACTTGC | ||
| 297 | Rs57+155 | CAACAGTACAAGGCTTCAGCAGTG | |
| Rs57−449 | CCGAAACCTACGTTTAGAGTCGTC | ||
| hly | 542 | RsMP+338 | ATCGGCTCAGACTAGCGCCATAAT |
| RsMP−877 | GCTTCAAGATCGATGACCTTCGAG | ||
| 336 | RsMP+487 | TTACTGAGGTCCTTGATGGTCAGG | |
| RsMP−820 | CGATCGGTGCGGTCATTCAAGATA | ||
| rsh | 572 | RsH+231 | TCCGGTCATCATGCTTTCTTCGCT |
| RsH−800 | ATTGCCACCAAGCTGAAGTACCTG | ||
| 374 | RsH+401 | TGCCCAATCTGAAGACAGCGACTA | |
| RsH−772 | GGTCGATAATGCTCGTCATGCCTA | ||
| 16S-23S spacer | 751 | RS+1002 | CCGTCCAAGTCACGAAAGTTGGTA |
| ML−1329 | ATCGCAGATTCCCACGTCCTTCTT | ||
| 895 | RS+1002 | CCGTCCAAGTCACGAAAGTTGGTA | |
| ML−1469 | GTGGGTACTGAGATGTTTCAGTTC | ||