TABLE 2.
Genes that were differentially expressed across all three surfaces
| PA no. | Gene name | Gene product | Fold expression difference (30 min [surface] vs 5 min postattachmenta) |
||
|---|---|---|---|---|---|
| Plasticb | Silicone | Glass | |||
| PA0567 | Hypothetical protein | 0.684 | 0.200 | 0.411 | |
| PA0623 | Bacteriophage protein | 0.676 | 0.214 | 2.048 | |
| PA0839 | Transcriptional regulator | 0.590 | 0.000 | 0.252 | |
| PA0996 | pqsA | Coenzyme A ligase | 0.262 | 0.000 | 0.274 |
| PA1985 | pqqA | Coenzyme PQQ synthesis protein PqqA | 0.659 | 0.519 | 0.317 |
| PA2663 | ppyR | psl and pyoverdine operon regulator, PpyR | 0.669 | 0.000 | 0.218 |
| PA2664 | fhp | Nitric oxide dioxygenase | 0.164 | 0.000 | 0.059 |
| PA2759 | Hypothetical protein | 4.592 | 0.398 | 3.766 | |
| PA3205 | Hypothetical protein | 2.865 | 2.683 | 2.746 | |
| PA3871 | PpiC-type peptidyl-prolyl cis-trans isomerase | 23.313 | 2.875 | 15.000 | |
| PA3872 | narI | Respiratory nitrate reductase subunit gamma | 23.238 | 2.524 | 13.333 |
| PA3877 | narK1 | Nitrite extrusion protein 1 | 0.146 | 0.013 | 0.123 |
| PA3914 | moeA1 | Molybdenum cofactor biosynthetic protein A1 | 0.269 | 0.019 | 0.298 |
| PA3915 | moaB1 | Molybdopterin biosynthetic protein B1 | 0.092 | 0.014 | 0.070 |
| PA3916 | moaE | Molybdopterin-converting factor large subunit | 0.234 | 0.127 | 0.243 |
| PA3917 | moaD | Molybdopterin-converting factor small subunit | 0.282 | 0.167 | 0.211 |
| PA3918 | moaC | Molybdenum cofactor biosynthesis protein MoaC | 0.230 | 0.108 | 0.225 |
| PA4270.1 | 2.201 | 2.007 | 2.716 | ||
| PA4637a | Hypothetical protein | 0.331 | 0.209 | 0.324 | |
| PA5369 | pstS | Phosphate ABC transporter substrate-binding protein | 3.353 | 2.294 | 3.529 |
Fold changes of genes at 30 min postattachment on the indicated surfaces compared to those at 5 min postattachment on an Ibidi μ-Slide, where a fold change of 1 indicates no difference, a fold change of >1 indicates genes with elevated RNA levels compared to those at 5 min, and a fold change of <1indicates genes with reduced RNA levels compared to those at 5 min.
Polycarbonate plastic.