Table 1.
Genes Related to (A) Virulence Factors, (B, C) Antibiotic Resistance, and (D) Biogenic Amines
| Gene ID | Contig name | Start | End | Strand | Subject ID | Identities | Query coverage | VFID | VF name | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| – | – | – | – | – | – | – | – | – | – | ||||
| B | |||||||||||||
| Contig_namea | Gene_ID | Start | End | Query coverage | Identity | Cut_off Identity value | Subject_ID | Subject coverage | Gene_name | Related antibiotics | |||
| – | – | – | – | – | – | – | – | – | – | – | |||
| C | |||||||||||||
| Gene IDb | Contig_name | Start | End | Strand | Cut_Off | Pass bitscore | Best_Hit bitscore | Best_Hit ARO | Best Identities | Model_type | Drug Class | Resistance mechanism | AMR gene family |
| – | – | – | – | – | – | – | – | – | – | – | – | – | – |
| D | |||||||||||||
| Locus tag | Gene | Identity | Homology to | PFAM domain | |||||||||
| IDCC 1201_1_01385 | hdcA | 86.8 | histidine decarboxylase of Lactobacillus sp. A30 (AAB59151) | Histidine decarboxylase (PF02329) | |||||||||
aAntibiotic resistance genes were searched by ARDB using cutoff values of gene families.
bAntibiotic resistance genes were searched by CARD with strict significance.