Table 5. Summary of HTS and alignment results of the RVFV-positive mosquito pool.
Contig 1 | Contig 2 | Contig 3 | Contig 4 | Contig 5 | Contig 6 | Contig 7 | Contig 8 | |
---|---|---|---|---|---|---|---|---|
Accession number | OK392020 | OK415590 | OK415591 | OK415592 | OK415593 | OK415594 | OK415595 | OK415596 |
Length (bp) | 821 | 772 | 1940 | 4417 | 461 | 200 | 2065 | 233 |
Number of reads | 742 | 5719 | 1397 | 7188 | 4 | 2 | 934 | 1 |
Genome segment | S | S | L | L | M | M | M | M |
Most related sequence | KX944815.1 | EU312124 | KX944862.1 | KX944857.1 | KY366332.1 | KY366332.1 | KX944836.1 | KX944839.1 |
Identity (%, partial cds) | 98.91 | 98.97 | 99.28 | 99.25 | 99.13 | 100 | 99.18 | 97.84 |
Country | South Africa | Namibia | South Africa | South Africa | Mauritania | Mauritania | South Africa | South Africa |
Source (Host) | Bovine | Human | Ovine | Ovine | Human | Human | Bovine | Ovine |
Collection date | 2010 | 2004 | 2010 | 2009 | 2015 | 2015 | 2009 | 2010 |