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. 2022 Apr 27;25(5):104316. doi: 10.1016/j.isci.2022.104316
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Goat Anti-JAM-A R&D Systems AF1077; RRID: AB_2100596
Mouse Anti-JAM-A (Clone: J10.4) In-House Reagent Commercially Available; sc-53623; RRID: AB_784134
Rabbit Anti-JAM-A Invitrogen 36-1700; RRID: AB_2533241
Rabbit Anti-p-YAP S127 Cell Signaling Technology 4911; RRID: AB_2218913
Rabbit Anti-YAP1 Cell Signaling Technology 14074; RRID: AB_2650491
Rabbit Anti-Ki67 Abcam ab15580; RRID: AB_443209
Mouse Anti-ZO-1 Thermo Fisher Scientific 33-9100; RRID: AB_2533147
Rabbit Anti-EVI1 Thermo Fisher Scientific 711037; RRID: AB_2633107
Rabbit Anti-LATS1 Cell Signaling Technology 3477; RRID: AB_2133513
Rabbit Anti-p-LATS1 S909 Cell Signaling Technology 9157; RRID: AB_2133515
Rabbit Anti-NF2 Cell Signaling Technology 6995; RRID: AB_10828709
Rabbit Anti-NF2 Cell Signaling Technology 12888; RRID: AB_2650551
Rabbit Anti-p-NF2/Merlin S518 Cell Signaling Technology 9163; RRID: AB_2149793
Rabbit Anti-Calnexin Sigma-Aldrich C4731; RRID: AB_476845
Mouse Anti-14-3-3 BD Bioscience 561465; RRID: AB_10896967
Rabbit Anti-GAPDH Sigma-Aldrich G9545; RRID: AB_796208
Rabbit Anti- ZO-2 Life Technologies 389100; RRID: AB_2533390
Mouse Anti-ZO-2 Thermo Fisher Scientific 37-4700; RRID: AB_2533321
Mouse Anti-HA Sigma-Aldrich H9658; RRID: AB_260092
Rabbit Anti-HA Sigma-Aldrich H6908; RRID: AB_260070
Rabbit Anti-pan-TEAD Cell Signaling 13295; RRID: AB_2687902

Chemicals, peptides, and recombinant proteins

FuGENE 6 Promega E2691
Lipofectamine™ 3000 Thermo Fisher Scientific L3000015
Lipofectamine™ RNAiMAX reagent Thermo Fisher Scientific 13778075
Verteporfin Sigma-Aldrich SML0534
Tamoxifen Sigma-Aldrich T5648
Corn oil Sigma-Aldrich C8267
Matrigel Corning 365237; Lot 9112015
Recombinant human EGF R&D Systems 236-EG
Antibiotics/antimycotic Corning 30-003-Cl
(Ζ)-4-hydroxytamoxifen Sigma-Aldrich H7904
Protein A agarose beads Thermo Fisher Scientific 20333
Protein G agarose beads Thermo Fisher Scientific 20398
Protein A Dynabeads Thermo Fisher Scientific 1001D
Protein G Dynabeads Thermo Fisher Scientific 1003D
NuPAGE LDS Sample Buffer Thermo Fisher Scientific NP0007
Prolong™ Gold anti-fade agent Thermo Fisher Scientific P36930
Antigen unmasking buffer Vector Laboratories H-3300-250
SsoAdvanced Universal SYBR Green Supermix BioRad 1725270

Critical commercial assays

DC Protein Assay Bio-Rad 5000111
Click-iT™ EdU Alexa Fluor™ 488 Imaging Kit Invitrogen C10337

Experimental models: Cell lines

SKCO-15 Gift from Enrique Rodriguez-Boulan, Sloan Kettering Institute N/A
SW480 ATCC CCL-228™
HEK293T ATCC CRL-3216™
Enteroids derived from JAM-AERΔIEC mice This paper N/A
Enteroids derived from JAM-A-/- mice This paper N/A
Enteroids derived from JAM-Af/f mice This paper N/A
Enteroids derived from C57BL/6 mice This paper N/A

Experimental models: Organisms/strains

C57BL/6 mice Jackson Laboratory 000664; RRID: IMSR_JAX:000664
JAM-A−/− mice Gift from T. Sato, Cornell University N/A
JAM-Af/f mice Flemming et al., 2018 N/A
Villin-CreERT2 mice Gift from Sylvie Robine, Institut Curie-CNRS N/A
JAM-AERΔIEC mice This paper N/A

Oligonucleotides

siRNA Targeting Sequence: JAM-A Target 1
GGGUGACCUUCUUGCCAAUU
This paper N/A
siRNA Targeting Sequence: JAM-A Target 2
CGGGUGACCUUCUUGCCAAUU
This paper N/A
siRNA Targeting Sequence: Evi1 Target 1
UCUAAGGCUGAACUAGCAGUUUU
Adapted from Huang et al. 2016 N/A
siRNA Targeting Sequence: Evi1 Target 2
GCUGAUUGCAGAACCCAAAUUUU
Adapted from Huang et al. 2016 N/A
siRNA Targeting Sequence: NF2 Target 1 Thermo Fisher Scientific s224112
siRNA Targeting Sequence: NF2 Target 2 Thermo Fisher Scientific s224112
siRNA Targeting Sequence: Non-Targeting Silencer™ Select Negative Control Thermo Fisher Scientific 4390843
siRNA Targeting Sequence: TEAD1 Silencer™ Select Thermo Fisher Scientific 4392420; s13962
siRNA Targeting Sequence: TEAD1 Silencer™ Select Thermo Fisher Scientific 4392420; s13963
siRNA Targeting Sequence: TEAD2 Silencer™ Select Thermo Fisher Scientific 4392420; s16075
siRNA Targeting Sequence: TEAD2 Silencer™ Select Thermo Fisher Scientific 4292420; s16076
siRNA Targeting Sequence: TEAD3 Silencer™ Select Thermo Fisher Scientific 4292420; s13967
siRNA Targeting Sequence: TEAD3 Silencer™ Select Thermo Fisher Scientific 4292420; s13968
siRNA Targeting Sequence: TEAD4 Silencer™ Select Thermo Fisher Scientific 4292420; s13964
siRNA Targeting Sequence: TEAD4 Silencer™ Select Thermo Fisher Scientific 4292420; s13965
qPCR Primer Sequence Pair: EVI1 (human)
Forward: GACCAAGTTTTTCCTGATTTGC
Reverse: CCCTCTCTTCAGTATGTGACAGC
This paper N/A
qPCR Primer Sequence Pair: Evi1 (mouse)
Forward: TCCTTGAAGTGACTGCCATTC
Reverse: ATGCGTACTTTACAGAGATCCG
This paper N/A
qPCR Primer Sequence Pair: TBP (human)
Forward: TGCACAGGAGCCAAGAGTGAA
Reverse: CACATCACAGCTCCCCACCA
This paper N/A
qPCR Primer Sequence Pair: Tbp (mouse)
Forward: GGAATTGTACCGCAGCTTCAAA
Reverse:
GATGACTGCAGCAAATCGCTT
This paper N/A
qPCR Primer Sequence Pair: β-actin (human)
Forward: TCCCTGGAGAAGAGCTACGA
Reverse:
AGCACTGTGTTGGCGTACAG
This paper N/A
qPCR Primer Sequence Pair: CTGF (human)
Forward:
CCTGGTCCAGACCACAGAGT
Reverse:
TGGAG ATTTTGGGAGTACGG
Fallah and Beaulieu, 2020 N/A
qPCR Primer Sequence Pair: CYR61 (human)
Forward: TCCCTGTTTTTGGAATGGAG
Reverse:
GAGCACTGGGACCATGAAGT
Fallah and Beaulieu, 2020 N/A

Recombinant DNA

HA-tagged JAM-A pcDNA3.1 plasmid Mandell et al. 2004 N/A
JAM-A-WT pcDNA3.1 plasmid Mandell et al. 2004 N/A
JAM-A-DL1 pcDNA3.1 plasmid Mandell et al. 2004 N/A

Software and algorithms

GraphPad Prism version 8.01 GraphPad Software, Inc. https://www.graphpad.com/
ImageJ NIH https://imagej.nih.gov/ij/

Other

A1 Confocal Microscope Nikon N/A
Transwell filters Costar 3450
Plastic Chamber Slides Thermo Fisher Scientific 177445
Epoch microplate spectrophotometer BioTek N/A
RNeasy kit Qiagen 74106