Skip to main content
. Author manuscript; available in PMC: 2022 May 18.
Published in final edited form as: Pharmacoepidemiol Drug Saf. 2020 Dec 3;30(2):266–274. doi: 10.1002/pds.5177

TABLE 3.

Selected major structural birth defects (BDs) and updated algorithms for identifying these defects in automated healthcare data (shading denotes those BDs undergoing validation through chart review)

Organ system Specific diagnoses (ICD-10-CM Codes) Updated algorithms
Central nervous system Neural tube defects: Encephalocele, cranial Meningocele, encephalomyelocele, spina bifida 1 inpatient diagnosis or 2 outpatient diagnoses or 1 diagnosis and death in first year
Microcephaly 1 diagnosis at birth or head circumference <5%ile at birth or 3 diagnoses in first 3 months or 1 diagnosis and death in the first year
Holoprosencephaly 2 outpatient diagnoses or 1 diagnosis and death in first year
Eye Anophthalmia, microphthalmia, cataracts and other Lens defects 2 outpatient diagnosis or 1 diagnosis and death in first year
Ear Anotia, Microtia 2 outpatient diagnoses or 1 diagnosis and death in first year
Cardiac Severe cardiac defects: Single ventricle, tricuspid atresia, ebstein anomaly, hypoplastic left heart, hypoplastic right heart, common truncus, transposition, atrioventricular septal defects, tetralogy of fallot, aortic valve atresia or stenosis, coarctation, total anomalous pulmonary venous return 2 inpatient diagnoses or 1 inpatient and 1 outpatient diagnosis or 1 diagnosis and death in first year
Other cardiac defects: Septal defects, heterotaxy, pulmonary valve atresia, tricuspid stenosis, partial anomalous pulmonary venous return 2 diagnoses or 1 diagnosis and death in first year
Orofacial/Respiratory Choanal atresia 2 outpatient diagnoses or 1 diagnosis and death in first year
Cleft lip and/or Cleft palate 1 inpatient diagnosis or 2 outpatient diagnoses or 1 diagnosis and death in first year
Gastrointestinal Biliary atresia 1 inpatient diagnosis or 2 outpatient diagnoses or 1 diagnosis and death in first year
Intestinal atresia or stenosis 1 inpatient diagnosis or 2 outpatient diagnoses or 1 diagnosis and death in first year
Esophageal atresia with or without tracheoesophageal fistula 2 outpatient diagnoses or 1 inpatient and 1 outpatient diagnosis or 1 diagnosis and death in first year
Pyloric stenosis 1 inpatient diagnosis or 1 diagnosis and death in first year
Bladder exstrophy 1 inpatient diagnosis by 3 months of age and 1 outpatient diagnosis by 1 year or 1 diagnosis and death in the first year
Genitourinary/Renal Hypospadias 2 outpatient diagnoses or 1 diagnosis and death in first year; males only
Renal dysplasia 2 outpatient diagnoses or 1 diagnosis and death in first year;
Renal agenesis or hypoplasia 1 inpatient diagnosis and 1 outpatient diagnosis or 1 diagnosis and death in first year
Posterior urethral valves 2 outpatient diagnoses or 1 diagnosis and death in first year; males only
Musculoskeletal Gastroschisis 1 inpatient diagnosis or 2 outpatient diagnoses or 1 diagnosis and death in first year
Omphalocele 1 inpatient diagnosis by 3 months of age or 1 diagnosis and death in first year
Congenital diaphragmatic hernia 1 inpatient diagnosis by 3 months of age or 1 diagnosis and death in first year
Limb deficiency 1 inpatient or 2 outpatient diagnoses and 1 diagnosis within 3 months or 1 diagnosis and death in first year