Table 1.
Number and percentage of bacterial genomes with each nucleotide showing the least at each codon positiona.
A | T | C | G | |||||
---|---|---|---|---|---|---|---|---|
Genome
number |
Genome
percentage |
Genome
number |
Genome
percentage |
Genome
number |
Genome
percentage |
Genome
number |
Genome
percentage |
|
Firstb | 0 | 0 | 13,872 | 69.7 | 6,039 | 30.3 | 0 | 0 |
Second | 176 | 0.9 | 0 | 0 | 3 | 0.0 | 19,732 | 99.1 |
Third | 10,496 | 52.7 | 827 | 4.2 | 6,224 | 31.3 | 2,364 | 11.9 |
For each genome, we calculated frequency of four nucleotides at each codon position and chose the least nucleotides for this genome.
Taking the first codon position as an example, we explain the meaning of the genome number and genome percentage. As we know, a total of 19,911 genomes are involved. Among them, 13,872 genomes have T as the least nucleotide out of the four nucleotides at the first codon position and 6,039 genomes have C as the least nucleotide at this codon position. No genomes have A and G as the least nucleotide at this position. In other words, T constitutes the least nucleotides at the codon position in more genomes than A, C, and G.
The bold values indicate the least nucleotides at each codon position.