TABLE 1.
Fluorescently labeled oligonucleotide probes used in this study
| Probe name | OPD namea | Target group | Probe sequence (5′ to 3′) | Reference |
|---|---|---|---|---|
| EUB338 | S-D-Bact-0338-a-A-18 | Bacteria | GCTGCCTCCCGTAGGAGT | 3 |
| ARC915 | S-D-Arch-0915-a-A-20 | Archaea | GTGCTCCCCCGCCAATTCCT | 19 |
| MG1200 | S-O-Mmic-1200-a-A-21 | Methanomicrobiales | CGGATAATTCGGGGCATGCTG | 14 |
| MB1174 | S-F-Mbac-1174-a-A-22 | Methanobacteriaceae | TACCGTCGTCCACTCCTTCCTC | 14 |
| MS1414 | S-F-Msar-1414-a-A-21 | Methanosarcinaceae | CTCACCCATACCTCACTCGGG | 14 |
| MX825 | S-F-Msae-0825-a-A-23 | Methanosaetaceae | TCGCACCGTGGCCGACACCTAGC | 14 |
| D660 | S-G-Dsbb-0660-a-A-20 | Desulfobulbus | GAATTCCACTTTCCCCTCTG | 5 |
| SYB701 | S-*-MUG28-0701-a-A-20 | rDNA clone MUG28 | AAATGCAGTTTCCAATGCAC | This study |
| GNSB633 | S-*-GNSB-0633-a-A-20 | rDNA clones in the green nonsulfur bacteria | TAGCCCGCCAGTCTTGAACG | This study |
a
OPD, oligonucleotide probe database (1).