TABLE 3.
Summary of the clean reads alignment to the goat reference genome.
| Sample Name | Total Reads | Total Mapped | Multiple Mapped | Uniquely Mapped |
|---|---|---|---|---|
| IMA1 | 104026824 | 58826296 (56.55%) | 5007777 (4.81%) | 53818519 (51.74%) |
| IMA2 | 95783582 | 52467109 (54.78%) | 3378217 (3.53%) | 49088892 (51.25%) |
| IMA3 | 98296238 | 64127686 (65.24%) | 4344218 (4.42%) | 59783468 (60.82%) |
| IMA4 | 85127438 | 49359285 (57.98%) | 3294364 (3.87%) | 46064921 (54.11%) |
| IMA5 | 92052240 | 53774996 (58.42%) | 3822996 (4.15%) | 4,9952000 (54.26%) |
| IMPA1 | 87780640 | 80670979 (91.9%) | 6751338 (7.69%) | 73919641 (84.21%) |
| IMPA2 | 87544572 | 70588932 (80.63%) | 6111853 (6.98%) | 64477079 (73.65%) |
| IMPA3 | 84676776 | 79535538 (93.93%) | 7181504 (8.48%) | 72354034 (85.45%) |
| IMPA4 | 91173148 | 78490007 (86.09%) | 6695561 (7.34%) | 71794446 (78.75%) |
| IMPA5 | 1,00918664 | 96226399 (95.35%) | 8091611 (8.02%) | 88134788 (87.33%) |
| SA1 | 96016600 | 47294011 (49.26%) | 3673053 (3.83%) | 43620958 (45.43%) |
| SA2 | 107224614 | 56076878 (52.3%) | 4502794 (4.2%) | 51574084 (48.1%) |
| SA3 | 90603612 | 45139764 (49.82%) | 3788336 (4.18%) | 41351428 (45.64%) |
| SA4 | 86251102 | 41189983 (47.76%) | 2755466 (3.19%) | 38434517 (44.56%) |
| SA5 | 86443762 | 42725042 (49.43%) | 3277966 (3.79%) | 39447076 (45.63%) |
| SPA1 | 87343234 | 49526419 (56.7%) | 3284941 (3.76%) | 46241478 (52.94%) |
| SPA2 | 105239820 | 57264925 (54.41%) | 3543746 (3.37%) | 53721179 (51.05%) |
| SPA3 | 112810026 | 63555694 (56.34%) | 4360117 (3.87%) | 59195577 (52.47%) |
| SPA4 | 109357518 | 59092897 (54.04%) | 3924824 (3.59%) | 55168073 (50.45%) |
| SPA5 | 121273002 | 64549280 (53.23%) | 4580894 (3.78%) | 59968386 (49.45%) |