TABLE 2.
Probes for the analysis of phototrophic sulfur bacteria in Lake Cadagno, Switzerland
| Probe | Target | Sequencea |
|---|---|---|
| Cmok453 | C. okenii DSM169 and clone 359b | 5′AGCCGATGGGTATTAACCACGAGGTT |
| Cmvi453 | C. vinosum DSM180 | 5′TACACGGAGGTATTAGCCCCGTGCTT |
| Apur453 | A. purpureus DSM4197 and clone 345b | 5′TCGCCCAGGGTATTATCCCAAACGAC |
| Laro453 | L. roseopersicina DSM229 and clone 136b | 5′CATTCCAGGGTATTAACCCAAAATGC |
| S453Dc | Clone 261b | 5′CAGCCCAGGGTATTAACCCAAGCCGC |
| S453Fc | Clones 335 and 371b | 5′CCCTCATGGGTATTARCCACAAGGCG |
a
Positions 453 to 478 on the 16S rRNA according to the E. coli numbering (5).
b
Clones of a 16S rRNA gene clone library obtained from DNA extracted from bacteria of the chemocline in Lake Cadagno, Switzerland.
c
Design of probes based on clones of a 16S rRNA gene clone library obtained from DNA extracted from bacteria of the chemocline in Lake Cadagno, Switzerland.