Table 1.
Target gene | GenBank accession nr | Primer sequence | Efficiency (%) | Slope | r2 | Amplicon length (bp) |
---|---|---|---|---|---|---|
BD-1 [44] |
NM_213838 |
F 5′-CAGCCACCAGCATGAGACT-3′ R 5′-CAGGTAACAGGACCATGAGGA-3′ |
101.47 | − 3.28 | 0.99 | 63 |
CLDN4 [44] |
AB235916 |
F 5’-TATCATCCTGGCCGTGCTA-3’ R 5’-CATCATCCACGCAGTTGGT-3’ |
100.2 | − 3.29 | 0.99 | 71 |
OCLN [45] |
FN400888 |
F 5’-GGAGTGATTCGGATTCTGTCTATGCT-3’ R 5’-CGCCTGGGCTGTTGGGTTGA-3’ |
103.8 | − 3.03 | 0.99 | 423 |
ZO-1 [45] |
CV870309 |
F 5′-GGCGCACGGCGAAGGTAATT-3′ R 5′-CTATCAAACTCAGGAGGCGGCACT-3’ |
103.7 | − 3.21 | 0.98 | 405 |
NF-κB [44] |
DQ834921 |
F 5’-GAAGGACCTCTAGAAGGCAAAA-3’ R 5’-GCTTTGGTTTATGCGGTGTT-3’ |
104.2 | − 3.22 | 0.99 | 63 |
TNF-α [46] |
NM_214022 |
F 5’-ACTGCACTTCGAGGTTATCGG-3’ R 5’-GGCGACGGGCTTATCTGA-3’ |
98.5 | − 3.36 | 0.99 | 118 |
HPRT-1 [44] |
DQ845175 |
F 5’-ACACTGGCAAAACAATGCAA-3’ R 5’-TGCAACCTTGACCATCTTTG-3’ |
102.01 | − 3.25 | 0.99 | 71 |
HPRT-1 hypoxanthine phosphoribosyltransferase-1, CLDN4 claudin-4, OCLN occludin, ZO-1 zonula occludens-1, BD-1 β-defensin 1, NF-κB nuclear factor-κB, TNF-α tumor necrosis factor-alpha, F forward, R reverse, bp base pairs