Skip to main content
. 2022 May 19;8:21. doi: 10.1186/s40813-022-00264-z

Table 1.

Target genes and details of the primer sequences used for quantitative SYBR® Green real-time PCR amplification. The HPRT-1 gene was used as endogenous control gene

Target gene GenBank accession nr Primer sequence Efficiency (%) Slope r2 Amplicon length (bp)

BD-1

[44]

NM_213838

F 5′-CAGCCACCAGCATGAGACT-3′

R 5′-CAGGTAACAGGACCATGAGGA-3′

101.47 − 3.28 0.99 63

CLDN4

[44]

AB235916

F 5’-TATCATCCTGGCCGTGCTA-3’

R 5’-CATCATCCACGCAGTTGGT-3’

100.2 − 3.29 0.99 71

OCLN

[45]

FN400888

F 5’-GGAGTGATTCGGATTCTGTCTATGCT-3’

R 5’-CGCCTGGGCTGTTGGGTTGA-3’

103.8 − 3.03 0.99 423

ZO-1

[45]

CV870309

F 5′-GGCGCACGGCGAAGGTAATT-3′

R 5′-CTATCAAACTCAGGAGGCGGCACT-3’

103.7 − 3.21 0.98 405

NF-κB

[44]

DQ834921

F 5’-GAAGGACCTCTAGAAGGCAAAA-3’

R 5’-GCTTTGGTTTATGCGGTGTT-3’

104.2 − 3.22 0.99 63

TNF-α

[46]

NM_214022

F 5’-ACTGCACTTCGAGGTTATCGG-3’

R 5’-GGCGACGGGCTTATCTGA-3’

98.5 − 3.36 0.99 118

HPRT-1

[44]

DQ845175

F 5’-ACACTGGCAAAACAATGCAA-3’

R 5’-TGCAACCTTGACCATCTTTG-3’

102.01 − 3.25 0.99 71

HPRT-1 hypoxanthine phosphoribosyltransferase-1, CLDN4 claudin-4, OCLN occludin, ZO-1 zonula occludens-1, BD-1 β-defensin 1, NF-κB nuclear factor-κB, TNF-α tumor necrosis factor-alpha, F forward, R reverse, bp base pairs