Table 1.
List of recommended data sets
| Data type | Data (source) | Limitations |
|---|---|---|
| Physiology | ||
| Micro (ephys) | International Brain Laboratory (https://www.internationalbrainlab.com/) | No data yet |
| Micro (opto) | Brain Observatory (http://observatory.brain-map.org/visualcoding) | Not community driven |
| Meso (fMRI) | Healthy Brain Network (http://fcon_1000.projects.nitrc.org/indi/cmi_healthy_brain_network/) | Only ~1,000 samples available now |
| Macro (behavior) | None | NA |
| Anatomy | ||
| Nano (EM) | TEMCA2 Data (FAFB) (https://www.temca2data.org) | Volumetric annotations not publicly available |
| Micro (LM) | MouseLight and Z Brain Atlas (http://mouselight.janelia.org/; https://engertlab.fas.harvard.edu/Z-Brain/home/) | Not integrated with other related data sets |
| Meso (sMRI & dMRI) | Healthy Brain Network (http://fcon_1000.projects.nitrc.org/indi/cmi_healthy_brain_network/) | Only ~1,000 samples available now |
| Genetics | ||
| Nano (in situ) | None | NA |
| Micro (scRNAseq) | None | NA |
| Meso (tissue) | Allen Brain Map (https://portal.brain-map.org) | NA |
Abbreviations: dMRI, diffusion MRI; EM, electron microscopy; ephys, electrophysiology; FAFB, full adult fly brain; fMRI, functional MRI; LM, light microscopy; NA, not applicable; opto, optical microscopy; scRNAseq, single-cell RNA sequencing; sMRI, structural MRI.