TABLE 2.
Listeria monocytogenes diversity
| Isolate ID | sigB AT | SNP cluster ‡ | ST | CC | Lineage |
|---|---|---|---|---|---|
| FSL R9‐8346 | 61 | PDS000024423.3 | 389 | 389 | I |
| FSL R9‐8348 | 57 | – | 795 | 795 | II |
| FSL R9‐8350 | 57 | – | 37 | 37 | II |
| FSL R9‐8352 | 86 | – | 391 | 89 | II |
| FSL R9‐8380 | 61 | PDS000003170.45 | 554 | 554 | I |
| FSL R9‐8502 | 57 | – | 365 | 14 | II |
| FSL R9‐8704 | 57 | – | 368 | 368 | II |
| FSL R9‐8818 | 57 | – | 2469 | 2469 | II |
| FSL R9‐8822 | 58 | PDS000045213.3 | 388 | 388 | I |
| FSL R9‐9355 | 58 | – | 388 | 388 | I |
| FSL R9‐9447 | 58 | PDS000043859.2 | 1 | 1 | I |
| FSL R9‐9449 | 58 | PDS000045213.3 | 388 | 388 | I |
| FSL R9‐9581 | 59 | – | 2428 | 1790 | II |
Note: A ‘–’ indicates that the isolate was not placed into a SNP cluster (i.e. the isolate did not match any other isolate in the NCBI PD database by <50 SNPs).
Abbreviations: CC, clonal complex; ST, sequence type; sigB AT, sigB allelic type; SNP, single nucleotide polymorphism.
‡
SNP cluster: single nucleotide polymorphism cluster as assigned by NCBI Pathogen Detection database. A set of isolates different by less than 50 SNP difference in the whole genome is grouped within one SNP cluster.