Table 4. Synonymous and non-synonymous SNPs.
| Genotype | N | S | N/S | Fold change | p-value | |
|---|---|---|---|---|---|---|
| All SNPs | SD-Mal | 79 | 114 | 0.69 | 2.27 | <0.0001 |
| SD+ | 10,470 | 34,301 | 0.31 | |||
| Private SNPs | SD-Mal | 61 | 55 | 1.11 | 3.10 | <0.0001 |
| SD+ | 6782 | 18,938 | 0.36 | |||
| Shared SNPs | SD-Mal | 18 | 59 | 0.31 | 1.27 | 0.3722 |
| SD+ | 3688 | 15,363 | 0.24 |
Counts of non-synonymous (N) and synonymous (S) SNPs in the In(2R)Mal region of SD-Mal chromosomes, and the equivalent region of uninverted, SD+ chromosomes. N/S ratio per genotype, fold-change of N/S ratios between SD-Mal and SD+. p-values reported by Pearson’s χ2 test of independence.