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. 2022 May 10;50(9):4860–4876. doi: 10.1093/nar/gkac339

Figure 10.

Figure 10.

Snapshots of mismatches interacting via hydrogen bonds or base stacking. (A) Hbonds between O6 and N1/N2 when mismatches are inside the helical core in anti–syn conformations; (B) syn–syn conformation; (C) Hbonds between Gi:N1/N2 and C(i − 2):(phosphate group); (D) base stacking by two mismatches; (E) inter-strand Hbonds between two mismatched bases; (F) inter-strand Hbonds between two mismatches via N1:OP1. O, N, C and H atoms are shown in red, blue, cyan, and white colors, respectively.