TABLE 3.
Genotypea | No. of isolates distributed by sampling siteb
|
Substrate rangec
|
RFLP pattern(s)d | HMW plasmide | IS1071f | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Total | BRC | DHC | Well | GW | SBR | 3-CBA | 4-CBA | 3,4-DCBA | ||||
clcABD | 15 | 6 | 0 | 3 | 4 | 2 | 12 | 6 | 0 | ii–vi | 8 | 6 |
cbaABC | 9 | 6 | 2 | 1 | 0 | 0 | 8 | 4 | 8 | i | 4 | 9 |
fcbB | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | ii–iv | 2 | 3 |
Genotypes are as described for Table 1.
Abbreviations for isolate sources: BRC, isolates from samples of the sediment-water interface of Bloody Run Creek (this site was previously shown to be contaminated by Hyde Park leachate [35]); DHC, isolates from the Devil’s Hole Creek groundwater seep contaminated by Hyde Park leachate (35); Well, isolates from sampling wells drilled into the unconsolidated wastes at Hyde Park; GW, isolates from contaminated groundwater collected from the perimeter trench around the Hyde Park site; SBR, isolates from the sequencing batch reactors used for treating contaminated groundwater at Hyde Park (49).
Numbers of isolates able to degrade selected CBA congeners. Substrate abbreviations are as described in the footnotes to Tables 1 and 2. Some isolates degraded more than one CBA congener.
RFLP patterns grouped according to the fragment sizes following restriction enzyme digestion as follows. For clcABD, NdeI restriction fragments that hybridized with the clcABD probe were as follows: i, 19.5, 9.0, and 1.6 kb (detected in the control strain AC866 only); ii, 7.4 kb; iii, 9.5 and 5.7 kb; iv, 13.3, 10.3, and 5.7 kb; v, 10.3 and 5.7 kb; vi, 7.1 kb. For cbaABC, EcoRI restriction fragments that hybridized with the cbaABC probe represented one pattern only: i, 1.4- and 1.1-kb fragments (as for the control strain BR60). For fcbB, EcoRI restriction fragments that hybridized with the fcbB probe were as follows: i, 2.0 and 1.6 kb (detected in the control strain CBS3 only); ii, 4.9 kb; iii, 11.2 kb; and iv, 3.4 kb.
Number of isolates containing plasmids greater than 30 kb in size. HMW, high molecular weight.
Number of isolates containing the IS1071 3.1-kb NheI restriction fragment detected by hybridization with the HindIII fragment H4 probe.