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. 1999 Apr;65(4):1627–1635. doi: 10.1128/aem.65.4.1627-1635.1999

TABLE 3.

Numbers of clc, cba, and fcb isolates; their substrate ranges; and genetic properties

Genotypea No. of isolates distributed by sampling siteb
Substrate rangec
RFLP pattern(s)d HMW plasmide IS1071f
Total BRC DHC Well GW SBR 3-CBA 4-CBA 3,4-DCBA
clcABD 15 6 0 3 4 2 12 6 0 ii–vi 8 6
cbaABC 9 6 2 1 0 0 8 4 8 i 4 9
fcbB 4 4 0 0 0 0 0 4 0 ii–iv 2 3
a

Genotypes are as described for Table 1

b

Abbreviations for isolate sources: BRC, isolates from samples of the sediment-water interface of Bloody Run Creek (this site was previously shown to be contaminated by Hyde Park leachate [35]); DHC, isolates from the Devil’s Hole Creek groundwater seep contaminated by Hyde Park leachate (35); Well, isolates from sampling wells drilled into the unconsolidated wastes at Hyde Park; GW, isolates from contaminated groundwater collected from the perimeter trench around the Hyde Park site; SBR, isolates from the sequencing batch reactors used for treating contaminated groundwater at Hyde Park (49). 

c

Numbers of isolates able to degrade selected CBA congeners. Substrate abbreviations are as described in the footnotes to Tables 1 and 2. Some isolates degraded more than one CBA congener. 

d

RFLP patterns grouped according to the fragment sizes following restriction enzyme digestion as follows. For clcABD, NdeI restriction fragments that hybridized with the clcABD probe were as follows: i, 19.5, 9.0, and 1.6 kb (detected in the control strain AC866 only); ii, 7.4 kb; iii, 9.5 and 5.7 kb; iv, 13.3, 10.3, and 5.7 kb; v, 10.3 and 5.7 kb; vi, 7.1 kb. For cbaABC, EcoRI restriction fragments that hybridized with the cbaABC probe represented one pattern only: i, 1.4- and 1.1-kb fragments (as for the control strain BR60). For fcbB, EcoRI restriction fragments that hybridized with the fcbB probe were as follows: i, 2.0 and 1.6 kb (detected in the control strain CBS3 only); ii, 4.9 kb; iii, 11.2 kb; and iv, 3.4 kb. 

e

Number of isolates containing plasmids greater than 30 kb in size. HMW, high molecular weight. 

f

Number of isolates containing the IS1071 3.1-kb NheI restriction fragment detected by hybridization with the HindIII fragment H4 probe.