Table 1.
Docking results for the four candidate transporters, xylE (self-docking) and Gxf1
Protein name | Xylose | Glucose | ||
---|---|---|---|---|
Affinity | Δ RMSD from crystal | Affinity | Δ RMSD from crystal | |
xylE | − 5.8 | 1.776 | − 6 | 0.619 |
SuL | − 5.0 | 0.948 | − 5.8 | 1.166 |
Gxf1 | − 5.3 | 1.085 | − 5.7 | 1.296 |
SpH | − 5.4 | 2.274 | − 5.5 | 2.252 |
SpX | − 5.5 | 2.454 | − 6 | 2.668 |
SpG | − 5.5 | 2.300 | − 5.6 | 1.223 |
Affinity represents the stability of the ligand in the binding site (the more negative the better), and ΔRMSD represents the difference in pose between docked prediction and xylE crystal position