Table 2.
Gene sets enriched in phenotype.
| Gene set name | NES | NOM P val | FDR q val |
|---|---|---|---|
| High expression | |||
| KEGG_SMALL_CELL_LUNG_CANCER | 1.82 | 0.001 | 0.112 |
| KEGG_BASAL_CELL_CARCINOMA | 1.72 | 0.002 | 0.194 |
| KEGG_ERBB_SIGNALING_PATHWAY | 1.65 | 0.016 | 0.280 |
| KEGG_WNT_SIGNALING_PATHWAY | 1.59 | 0.026 | 0.310 |
| KEGG_PROSTATE_CANCER | 1.51 | 0.042 | 0.355 |
| GO_REGULATION_OF_EPIDERMIS_DEVELOPMENT | 2.12 | 0.001 | 0.012 |
| GO_KERATINOCYTE_PROLIFERATION | 2.10 | 0.001 | 0.013 |
| GO_EPIDERMIS_MORPHOGENESIS | 2.07 | 0.001 | 0.014 |
| GO_REGULATION_OF_EPIDERMAL_CELL_DIFFERENTIATION | 2.04 | 0.001 | 0.015 |
| GO_REGULATION_OF_KERATINOCYTE_DIFFERENTIATION | 2.03 | 0.001 | 0.017 |
| Low expression | |||
| KEGG_TYPE_I_DIABETES_MELLITUS | -1.82 | 0.015 | 0.275 |
| KEGG_PRIMARY_IMMUNODEFICIENCY | -1.75 | 0.017 | 0.095 |
| KEGG_SYSTEMIC_LUPUS_ERYTHEMATOSUS | -1.80 | 0.024 | 0.112 |
| KEGG_ALZHEIMERS_DISEASE | -1.61 | 0.032 | 0.118 |
| GO_CYTOPLASMIC_UBIQUITIN_LIGASE_COMPLEX | -2.15 | 0.001 | 0.031 |
| GO_REGULATION_OF_B_CELL_DIFFERENTIATION | -1.96 | 0.001 | 0.409 |
| GO_REGULATORY_T_CELL_DIFFERENTIATION | -1.80 | 0.008 | 0.335 |
| GO_NEGATIVE_REGULATION_OF_PHAGOCYTOSIS | -1.78 | 0.009 | 0.262 |
| GO_POSITIVE_REGULATION_OF_B_CELL_PROLIFERATION | -1.80 | 0.011 | 0.330 |
NES: normalized enrichment score; NOM: nominal; FDR: false discovery rate.