Table 2. GWAS results for 15 depression SNPs associated with pain in the NAPS2 data.

Chromosomal locations are based on build GRCh37/hg19.

Chr	Location (bp)	SNP	P	A1/A21	OR (A1)	95% CI	Freq. A1	Gene
2	15,686,142	rs141909432	4.8x10−5	A/G	3.97	2.04,7.71	0.02	NBAS
2	55,331,982	rs2968817	7.6x10−5	A/G	0.69	0.57,0.83	0.29	RTN4
3	12,816,143	rs113388258	2.4x10−5	C/T	2.03	1.46,2.82	0.06	CAND2, TMEM40
3	77,151,787	rs4624600	5.5x10−5	C/T	1.36	1.17,1.59	0.35	ROBO2*
5	11,187,984	rs59442633	2.9x10−5	C/T	1.81	1.37,2.38	0.08	CTNND2*
5	146,034,762	rs458909	9.4x10−5	A/C	3.44	1.85,6.39	0.02	PPP2R2B
8	14,471,243	rs11300774	6.1x10−5	T/TA	0.68	0.56,0.82	0.25	SGCZ*
11	100,059,361	rs2123323	7.0x10−5	T/C	1.39	1.18,1.64	0.46	CNTN5
11	100,126,103	rs36106152	7.9x10−5	G/GA	0.71	0.59,0.84	0.33	CNTN5
12	118,024,434	rs71450224	5.1x10−5	A/AAAAG	0.68	0.56,0.82	0.26	KSR2
17	79,004,271	rs12449867	2.0x10−5	C/T	1.44	1.22,1.71	0.34	BAIAP2-AS1
17	79,031,825	rs9898347	9.6x10−5	A/G	0.71	0.60,0.84	0.35	BAIAP2
17	79,036,107	rs34176221	5.9x10−5	AT/A	1.39	1.19,1.64	0.45	BAIAP2
18	49,961,950	rs1619323	4.2x10−5	C/T	0.66	0.54,0.81	0.22	DCC
22	45,353,108	rs8137390	4.3x10−5	G/A	1.50	1.24,1.82	0.20	PHF21B

^*Indicates regions associated with antidepressant response.

Footnote 1: A1 is the minor allele, A2 is the major allele.