TABLE 1.
Probe sequence used for FISH
| Target | Sequence (5′-3′)a | Probe nameb | Reference |
|---|---|---|---|
| Control (no group)c | CCTAGTGACGCCGTCGAC | Control | 32 |
| Universal | GWATTACCGCGGCKGCTG | S-*-Univ-0519-a-A-18 | 24a |
| Bacteria | ACCGCTTGTGCGGGCCC | S-Bact-0927-b-A-17 | 18 |
| α-Proteobacteria | CGTTCGYTCTGAGCCAG | S-Sc-aProt-0019-a-A-17 | 29 |
| Cytophaga-Flavobacterium group | TGGTCCGTRTCTCAGTAC | S-*-CF-0319-a-A-18 | 3 |
a
W = A or T; Y = C or T; R = A or G.
b
Probe names based on names in the Oligonucleotide Probe Database (31a).
c
There were more than three mismatches compared with all of the rRNA sequences in the RDP database, and there was no appropriate Oligonucleotide Probe Database name.