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. Author manuscript; available in PMC: 2023 Jan 1.
Published in final edited form as: Methods Mol Biol. 2022;2405:1–37. doi: 10.1007/978-1-0716-1855-4_1

Table 2.

Web accessible databases dedicated to antimicrobial peptidesa

Databases & Prediction algorithms Link Notes Citing References
APD3 http://aps.unmc.edu/AP/main.php Antimicrobial peptide database, with curated, experimentally verified antimicrobial peptides from bacteria, archaea, protists, fungi, plants, and animals [11]
CAMPR3 http://www.camp3.bicnirrh.res.in/ Collection of Anti-microbial peptides [18]
DBAASP v3 https://dbaasp.org Database of antimicrobial activity and structure of peptides [33]
Defensins knowledgebase http://defensins.bii.a-star.edu.sg/ Antimicrobial peptides from the defensin family [34]
BaAMPs http://www.baamps.it/ Database of biofilm-active antimicrobial peptides [35]
BACTIBASE http://bactibase.hammamilab.org/about.php Bacterocin type naturally occurring antimicrobial peptides. [36]
DADP http://split4.pmfst.hr/dadp/ Database of anuran (frog or toad) defense peptides [37]
DRAMP http://dramp.cpu-bioinfor.org Database of AMPs including clinical trial data on peptides. [38]
Peptaibol http://peptaibol.cryst.bbk.ac.uk/introduction.htm Database of Peptaibols, mainly antifungal peptides. [39]
LAMP http://biotechlab.fudan.edu.cn/database/lamp/index.php AMPs taken from other databases [40]
YADAMP http://www.yadamp.unisa.it/default.aspx Yet another database of antimicrobial peptides [41]
PhytAMP http://phytamp.pfba-lab-tun.org/main.php A database dedicated to plant AMPs [42]
InverPep https://ciencias.medellin.unal.edu.co/gruposdeinvestigacion/prospeccionydisenobiomoleculas/InverPep/public/home_en AMPs from invertebrates from other databases [43]
HIPdb http://crdd.osdd.net/servers/hipdb Manually curated database of experimentally validated HIV inhibitory peptides [44]
Thiobase https://db-mml.sjtu.edu.cn/THIOBASE/ Sulfur-rich, highly modified heterocyclic peptide antibiotics [45]
EnzyBase http://biotechlab.fudan.edu.cn/database/EnzyBase/home.php lysins, bacteriocins, autolysins, and lysozymes [46]
ParaPep http://crdd.osdd.net/raghava/parapep/ Antiparasitic peptides [47]
dbAMP Not accessible AMPs [48]
AntiTbPdb https://webs.iiitd.edu.in/raghava/antitbpdb/ Anti-TB peptides [49]
a

Adapted and updated based on the APD Links [13,20].