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. 2022 May 23;16(5):e0010374. doi: 10.1371/journal.pntd.0010374

Table 1. Characteristics of microsatellite markers used in this study.

Locus Primer sequence (5’-3’) Motif Ta(°C) Dye Allele size (bp)
Poolplexing group A
B3H 5’-GGTATGCGTGGATATGAAGC-3′ (AC)13 60 6-FAM 59–93
5’-CTCGGCATCGCAGTTTC-3′
AC52 5′-CATCTACGGCTGATGCAGAA-3′ (CA)18TA(CA)14 58 NED 86–140
5′-CGTCTGGCTAAAGTGGGAAT-3′
Ibh3 5′-GGAGAGGCTGCGATGTATCT-3′ (GT)2GG (GT)2GG(GT)4 58 HEX 117–133
5′-CAGGGCTGTCTTGACGAAG-3′
Poolplexing group B
E11 5′-TGCGTAGGGCAAAGGAGTT-3′ (GA)10 58 6-FAM 93–111
5′-GGGTGTCTGCCTGCATTC-3′
7GN 5’-CTCCTGGAACGGCTAACAC-3′ (AC)11 60 HEX 105–131
5’-TGATATGAGGCACATTCAGC-3′
LBA 5′-CCTCTGTGAGAAGGCAAGGA-3′ (GA)11 64 HEX 165–193
5’-GCTGCACATGCATTCTCTCGT-3′
EMI 5′-CGCTGAAGCACGGCGAATG-3′ (GT)20 60 NED 180–206
5′-CGTAGCTCCTCTGTCCGTTC-3′
Poolplexing group C
LRC 5′-CTGCCTCTGCCTCACCTACT-3′ (GT)17 60 HEX 112–166
5′-CTAACCCTCACACTCCCCATC-3′
ARP 5′-GGCTTCGGTCTGTTCGACTA-3′ (GT)10 60 NED 129–173
5′-CACCCACTCGCATCCGTA-3′
G09 5′-CAAGCAGGCAAGAGTCTGAAA-3′ (CA)3(GA)12 60 6-FAM 152–168
5′-GTCTCCCGTATTGCTCTCTCTA-3′

Ta: annealing temperature