Unique stem cell line identifier |
SCVIi028-A-1 |
Alternative name(s) of stem cell line |
SCVi-15S1-PE2 |
Institution |
Stanford University School of Medicine |
Contact information of the reported cell line distributor |
Ioannis Karakikes, ioannis1@stanford.edu
|
Type of cell line |
iPSC |
Origin |
Human |
Additional origin info |
Age: 21 |
|
Sex: Male |
|
Ethnicity: Not Hispanic or Latino |
Cell Source |
PBMCs |
Method of reprogramming |
SendaI Virus (CytoTune™-iPS 2.0 Sendai Reprogramming Kit) |
Clonality |
Clonal (Isolated using the Isocell supplied by iotaSciences to ensure mono-clonality) |
Evidence of the reprogramming transgene loss (including genomic copy if applicable) |
PCR, Western Blot, qPCR for sendai virus - negative |
Cell culture system used |
Matrigel-coated feeder-free culture, StemMACS iPS-Brew XF media |
Type of Genetic Modification |
Transgene generation |
Associated disease |
N/A |
Gene/locus |
AAVS1 (OMIM 102699)/ 19q13 |
Method of modification/site-specific nuclease used |
CRISPR/Cas9 |
Site-specific nuclease (SSN) delivery method |
RNP |
All genetic material introduced into the cells |
sgRNA for AAVS1 locus, pAAVS1-PE2-P2A-BFP donor plasmid |
Analysis of the nuclease-targeted allele status |
PCR for WT allele and Sanger sequencing and confirmation of integration by junction PCR |
Method of the off-target nuclease activity surveillance |
In silico prediction and Targeted PCR with Sanger sequencing |
Name of transgene |
PE2-P2A-BFP [Cas9(H840A)MMLV RT-P2A-BFP] |
Eukaryotic selective agent resistance (including inducible/gene expressing cell-specific) |
Positive (neomycin, and Dox-inducible puromycin) |
Inducible/constitutive system details |
TET-On |
Date archived/stock date |
07/2021 |
Cell line repository/bank |
https://hpscreg.eu/cell-line/SCVIi028-A-1
|
Ethical/GMO work approvals |
Patient was enrolled in the study by informed consent approved by the Stanford Institutional Review Board (IRB # 29904) |
Addgene/public access repository recombinant DNA sources’ disclaimers (if applicable) |
pAAVS1-NDi-CRISPRi (Gen1) was a gift from Bruce Conklin (Addgene plasmid # 73497 ; http://n2t.net/addgene:73497 ; RRID:Addgene_73497) pU6-Sp-pegRNA-HEK3_CTT_ins was a gift from David Liu (Addgene plasmid # 132778 ; http://n2t.net/addgene:132778 ; RRID:Addgene_132778) pTRE3G-PE2-P2A-BFP was a gift from Jesse Engreitz and Glen Munson. |