TABLE 4.
Top characteristics of publicly available E. coli genomes of swine origin carrying chromosomal mutations in ESBL/ampC genes.
Genotype | ST | Clonal complex | Phylotype | Serotype | fimH |
ESBL/ampC (n = 1223) | 10 (103), 58 (62), 100 (60), 101 (55), 88 (36) | 10 (268), 23 (123), 155 (89), 165 (85), 101 (65) | A (526), B1 (391), C (116), G (49), D (42) | –:H10 (42), O8:H9 (37), O149:H10 (35), O9:H4 (30), –:H4 (29) | H54 (177), unknown (115), H23 (74), H32 (74), H24 (70) |
blaCMY (n = 409) | 100 (46), 10 (37), 58 (32), 101 (19), 6449 (18) | 10 (62), 165 (53), 23 (49), 155 (41), 101 (20) | A (159), B1 (123), C (46), G (17), D (17) | O149:H10 (27), –:H10 (24), –:H4 (21), –:H51 (18), O9:H4 (16) | Unknown (52), H54 (51), H23 (31), H32 (31), H24 (27) |
blaCTX–M (n = 787) | 10 (63), 101 (32), 58 (30), 410 (27), 744 (27) | 10 (201), 23 (69), 155 (48), 101 (41), 165 (33) | A (358), B1 (257), C (66), G (31), F (26) | O89:H9 (34), –:H9 (24), –:H12 (23), –:H23 (20), –:H10 (17) | H54 (117), unknown (63), H41 (45), H32 (43), H23 (42), H24 (42) |
Numbers in parentheses indicate the number of isolates.