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. 2022 May 23;23:393. doi: 10.1186/s12864-022-08625-2

Table 1.

Significantly (P < 0.05) enriched metabolic pathways in KEGG and REACTOME. Differentially expressed genes (DEG) and differentially abundant proteins (DAP) involved in each pathway resulted from transcriptomic and proteomic analyses in proventriculus of fast (FG) vs slow (SG) growing chickens

Experiment Enriched Biological Pathway Upregulated DEG or DAP Databasea P value
Upregulated in SG Upregulated in FG
Transcriptomic analysis Glyoxylate Metabolism and Gly Degradation DLAT, PDHB, PDHX, LIAS, OGDH none REACTOME 0.014
Pyruvate Metabolism DLAT, PDHB, PDHX none REACTOME 0.030
Proteomic analysis Translocation of GLUT4 to membrane none YWHAE, YWHAQ, YWHAZ REACTOME 0.016
The Tricarboxylic Acid Cycle SDHA, SDHB CS REACTOME 0.001
Glycolysis TPI1 ENO1, PKM REACTOME 0.029
Gluconeogenesis GOT1, TPI1 ENO1 REACTOME 0.046
Biosynthesis of Amino Acid GOT1, PKM, TPI1 CS, ENO1, PRPS2 KEGG 0.003
Arg and Pro Metabolism none AGMAT, CKB, CKM, CKMT1A, GOT1 KEGG 0.005

Abbreviations: AGMAT Agmatinase, Arg arginine, CKB M Creatine Kinase Brain, Muscle, CS Citrate synthase, DAP Differentially abundant proteins, DEG Differentially expressed genes, DLAT dihydrolipoamide S-acetyltransferase, ENO1 Enolase 1, GLUT4 glucose transporter 4, Gly glycine, GOT1 Glutamic-oxaloacetic transaminase 1, LIAS Lipoic acid synthetase, OGDH oxoglutarate (α-ketoglutarate) dehydrogenase, PDHB pyruvate dehydrogenase (lipoamide) beta, PDHX pyruvate dehydrogenase complex component, PKM Pyruvate Kinase, Pro proline, PRPS2 Phosphoribosyl pyrophosphate synthetase 2, SDHA, B Succinate dehydrogenase complex flavoprotein subunit A, B, TPI1 Triosephosphate isomerase 1, YWHAE, Q, Z Tyrosine 3-monfooxygenase/ tryptophan 5-monooxygenase activation protein epsilon, theta, zeta

aThe reference for the databases used in the study are: KEGG (Kanehisa and Goto, 2000), REACTOME (Lewis et al., 2005)